{ "type": "genome", "identifier": "GCF_016583515.1", "organism": "Marichromatium gracile", "title": "Marichromatium gracile", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016583515.1", "bioproject": "PRJNA224116", "biosample": "SAMN07535002", "wgs_master": "NRRH00000000.1", "refseq_category": "na", "taxid": "1048", "species_taxid": "1048", "organism_name": "Marichromatium gracile", "infraspecific_name": "strain=DSM 203", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/08", "asm_name": "ASM1658351v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016583515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/583/515/GCF_016583515.1_ASM1658351v1", 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[], "sample_host_location": [ "USA: Massachusetts, Headley Harbour" ], "sample_host_location_id": [], "data_size": "1.102 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4047327", "Number of Sequences": "446", "Longest Sequences (bp)": "246156", "N50 (bp)": "85986", "Gap Ratio (%)": "0.000124", "GCcontent (%)": "68.0", "Number of CDSs": "3325", "Average Protein Length": "333.6", "Coding Ratio (%)": "82.2", "Number of rRNAs": "4", "Number of tRNAs": "62", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 100.0, 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95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 80.4223, "matched_fragments": 548, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 80.2807, "matched_fragments": 593, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 79.3943, "matched_fragments": 529, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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