{ "type": "genome", "identifier": "GCF_016583605.1", "organism": "Halorhodospira halochloris", "title": "Halorhodospira halochloris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016583605.1", "bioproject": "PRJNA224116", "biosample": "SAMN07534994", "wgs_master": "NRRM00000000.1", "refseq_category": "na", "taxid": "1052", "species_taxid": "1052", "organism_name": "Halorhodospira halochloris", "infraspecific_name": "strain=DSM 1059", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/08", "asm_name": "ASM1658360v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016583605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/583/605/GCF_016583605.1_ASM1658360v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2791376", "genome_size_ungapped": "2791376", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016583605.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2675", "protein_coding_gene_count": "2571", "non_coding_gene_count": "54", "pubmed_id": "33375353" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-08", "dateModified": "2021-01-08", "datePublished": "2021-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Halorhodospira halochloris" ], "sample_taxid": [ "1052" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Egypt: Wadi Natrun" ], "sample_host_location_id": [], "data_size": "0.796 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2791376", "Number of Sequences": "85", "Longest Sequences (bp)": "523676", "N50 (bp)": "148030", "Gap Ratio (%)": "0.000072", "GCcontent (%)": "56.0", "Number of CDSs": "2486", "Average Protein Length": "321.0", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halorhodospira halochloris", "strain": "strain=DSM 1059", "accession": "GCA_016583605.1", "taxid": 1052, 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"mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halorhodospira", "halochloris" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }