{
    "type": "genome",
    "identifier": "GCF_016583745.1",
    "organism": "Chromatium okenii",
    "title": "Chromatium okenii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016583745.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07535000",
        "wgs_master": "NRRQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "61644",
        "species_taxid": "61644",
        "organism_name": "Chromatium okenii",
        "infraspecific_name": "strain=DSM 169",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/08",
        "asm_name": "ASM1658374v1",
        "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel",
        "gbrs_paired_asm": "GCA_016583745.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/583/745/GCF_016583745.1_ASM1658374v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3203387",
        "genome_size_ungapped": "3201779",
        "gc_percent": "52.500000",
        "replicon_count": "0",
        "scaffold_count": "147",
        "contig_count": "147",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016583745.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2931",
        "protein_coding_gene_count": "2818",
        "non_coding_gene_count": "52",
        "pubmed_id": "33375353"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-08",
    "dateModified": "2021-01-08",
    "datePublished": "2021-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chromatium okenii"
        ],
        "sample_taxid": [
            "61644"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Ostrau near Halle"
        ],
        "sample_host_location_id": [],
        "data_size": "0.891 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3203387",
        "Number of Sequences": "147",
        "Longest Sequences (bp)": "182965",
        "N50 (bp)": "88898",
        "Gap Ratio (%)": "0.050478",
        "GCcontent (%)": "52.5",
        "Number of CDSs": "2732",
        "Average Protein Length": "337.9",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "14"
    },
    "has_analysis": true,
    "_dfastqc": {
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            },
            {
                "organism_name": "Allochromatium warmingii",
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                "accession": "GCA_900107145.1",
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                "species_taxid": 61595,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Marichromatium purpuratum",
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                "accession": "GCA_000224005.3",
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                "species_taxid": 73141,
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            {
                "organism_name": "Thiocystis minor",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
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                "accession": "GCA_016583515.1",
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                "species_taxid": 1048,
                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
                "organism_name": "Marichromatium gracile",
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                "status": "below_threshold"
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            {
                "organism_name": "Thiocapsa bogorovii",
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            {
                "organism_name": "Allochromatium tepidum",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Allochromatium humboldtianum",
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                "status": "below_threshold"
            }
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                "mean_intra_species_ani": "N/A",
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}