{ "type": "genome", "identifier": "GCF_016583795.1", "organism": "Rhabdochromatium marinum", "title": "Rhabdochromatium marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016583795.1", "bioproject": "PRJNA224116", "biosample": "SAMN07535018", "wgs_master": "NRRS00000000.1", "refseq_category": "reference genome", "taxid": "48729", "species_taxid": "48729", "organism_name": "Rhabdochromatium marinum", "infraspecific_name": "strain=DSM 5261", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/08", "asm_name": "ASM1658379v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016583795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/583/795/GCF_016583795.1_ASM1658379v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4363877", "genome_size_ungapped": "4363877", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "214", "contig_count": "214", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016583795.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3880", "protein_coding_gene_count": "3709", "non_coding_gene_count": "56", "pubmed_id": "33375353" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-08", "dateModified": "2021-01-08", "datePublished": "2021-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhabdochromatium marinum" ], "sample_taxid": [ "48729" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Massachusetts, West Falmouth/Sippewissett" ], "sample_host_location_id": [], "data_size": "1.234 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4363877", "Number of Sequences": "214", "Longest Sequences (bp)": "175348", "N50 (bp)": "49404", "Gap Ratio (%)": "0.000183", "GCcontent (%)": "59.7", "Number of CDSs": "3739", "Average Protein Length": "341.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdochromatium marinum", "strain": "strain=DSM 5261", "accession": "GCA_016583795.1", 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