{ "type": "genome", "identifier": "GCF_016584055.1", "organism": "Halorhodospira neutriphila", "title": "Halorhodospira neutriphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016584055.1", "bioproject": "PRJNA224116", "biosample": "SAMN07535017", "wgs_master": "NRSH00000000.1", "refseq_category": "reference genome", "taxid": "168379", "species_taxid": "168379", "organism_name": "Halorhodospira neutriphila", "infraspecific_name": "strain=DSM 15116", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/08", "asm_name": "ASM1658405v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016584055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/584/055/GCF_016584055.1_ASM1658405v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2394163", "genome_size_ungapped": "2394163", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "287", "contig_count": "287", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016584055.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2483", "protein_coding_gene_count": "2344", "non_coding_gene_count": "56", "pubmed_id": "33375353" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-08", "dateModified": "2021-01-08", "datePublished": "2021-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Halorhodospira neutriphila" ], "sample_taxid": [ "168379" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Salin-de-Giraud" ], "sample_host_location_id": [], "data_size": "0.640 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2394163", "Number of Sequences": "287", "Longest Sequences (bp)": "54713", "N50 (bp)": "15252", "Gap Ratio (%)": "0.000334", "GCcontent (%)": "72.0", "Number of CDSs": "2067", "Average Protein Length": "310.8", "Coding Ratio (%)": "80.5", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, 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true, "ani": 78.2249, "matched_fragments": 216, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 77.91, "matched_fragments": 264, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 77.5339, "matched_fragments": 153, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter aquaticus", "strain": "strain=SP30", "accession": "GCA_007625215.1", "taxid": 1935996, "species_taxid": 1935996, "relation_to_type": "type", "validated": true, "ani": 77.4942, "matched_fragments": 137, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 77.2797, "matched_fragments": 180, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 77.2163, "matched_fragments": 190, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 77.0718, "matched_fragments": 174, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 77.0396, "matched_fragments": 143, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa halophila", "strain": "strain=DSM 6210", "accession": "GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 76.9959, "matched_fragments": 205, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 76.9315, "matched_fragments": 145, "total_fragments": 660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", 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