{
    "type": "genome",
    "identifier": "GCF_016586355.1",
    "organism": "Anaerostipes butyraticus",
    "title": "Anaerostipes butyraticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Department of Food, Aroma and Cosmetic Chemistry, Faculty of Bioindustry, Tokyo University of Agriculture",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016586355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00220745",
        "wgs_master": "BLYI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "645466",
        "species_taxid": "645466",
        "organism_name": "Anaerostipes butyraticus",
        "infraspecific_name": "strain=JCM 17466",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/21",
        "asm_name": "ASM1658635v1",
        "asm_submitter": "Department of Food, Aroma and Cosmetic Chemistry, Faculty of Bioindustry, Tokyo University of Agriculture",
        "gbrs_paired_asm": "GCA_016586355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/586/355/GCF_016586355.1_ASM1658635v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3173732",
        "genome_size_ungapped": "3173732",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "85",
        "contig_count": "85",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016586355.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "3290",
        "protein_coding_gene_count": "3151",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-21",
    "dateModified": "2020-12-21",
    "datePublished": "2020-12-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerostipes butyraticus"
        ],
        "sample_taxid": [
            "645466"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.893 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3173732",
        "Number of Sequences": "85",
        "Longest Sequences (bp)": "319852",
        "N50 (bp)": "147232",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.0",
        "Number of CDSs": "3182",
        "Average Protein Length": "296.2",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaerostipes butyraticus",
                "strain": "strain=JCM 17466",
                "accession": "GCA_016586355.1",
                "taxid": 645466,
                "species_taxid": 645466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1022,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Anaerostipes faecalis",
                "strain": "strain=AGMB03513",
                "accession": "GCA_018982945.1",
                "taxid": 2738446,
                "species_taxid": 2738446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9837,
                "matched_fragments": 282,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7693,
                "matched_fragments": 83,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_000169235.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.7514,
                "matched_fragments": 65,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_025150245.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6893,
                "matched_fragments": 66,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.5797,
                "matched_fragments": 85,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes hadrus",
                "strain": "strain=DSM 3319",
                "accession": "GCA_000332875.2",
                "taxid": 649756,
                "species_taxid": 649756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5355,
                "matched_fragments": 227,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.5059,
                "matched_fragments": 83,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia marasmi",
                "strain": "strain=Marseille-P2377",
                "accession": "GCA_900258535.1",
                "taxid": 1917868,
                "species_taxid": 1917868,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0019,
                "matched_fragments": 63,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes rhamnosivorans",
                "strain": "strain=1y2",
                "accession": "GCA_005280655.1",
                "taxid": 1229621,
                "species_taxid": 1229621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9851,
                "matched_fragments": 153,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes hominis",
                "strain": "strain=BG01",
                "accession": "GCA_002270485.1",
                "taxid": 2025494,
                "species_taxid": 2025494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9714,
                "matched_fragments": 132,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes caccae",
                "strain": "strain=DSM 14662",
                "accession": "GCA_025146005.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9324,
                "matched_fragments": 152,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia wexlerae",
                "strain": "strain=DSM 19850",
                "accession": "GCA_025148125.1",
                "taxid": 418240,
                "species_taxid": 418240,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9251,
                "matched_fragments": 73,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerostipes caccae",
                "strain": "strain=JCM 13470",
                "accession": "GCA_014467075.1",
                "taxid": 105841,
                "species_taxid": 105841,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9004,
                "matched_fragments": 149,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia wexlerae",
                "strain": "strain=DSM 19850",
                "accession": "GCA_000484655.1",
                "taxid": 418240,
                "species_taxid": 418240,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.6765,
                "matched_fragments": 68,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mediterraneibacter butyricigenes",
                "strain": "strain=KCTC 15684",
                "accession": "GCA_003574295.1",
                "taxid": 2316025,
                "species_taxid": 2316025,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.656,
                "matched_fragments": 66,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia pseudococcoides",
                "strain": "strain=YL58",
                "accession": "GCA_001689125.2",
                "taxid": 1796616,
                "species_taxid": 1796616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4898,
                "matched_fragments": 54,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia pseudococcoides",
                "strain": "strain=YL58",
                "accession": "GCA_002221555.2",
                "taxid": 1796616,
                "species_taxid": 1796616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4285,
                "matched_fragments": 55,
                "total_fragments": 1029,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016586355.1",
                "gtdb_species": "s__Anaerostipes butyraticus",
                "ani": 100.0,
                "matched_fragments": 1022,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_019119895.1",
                "gtdb_species": "s__Anaerostipes avistercoris",
                "ani": 85.9251,
                "matched_fragments": 741,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002161065.1",
                "gtdb_species": "s__Anaerobutyricum faecale",
                "ani": 82.1392,
                "matched_fragments": 97,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019114985.1",
                "gtdb_species": "s__Anaerostipes excrementavium",
                "ani": 80.3779,
                "matched_fragments": 469,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900016875.1",
                "gtdb_species": "s__Anaerobutyricum stercoris",
                "ani": 80.1683,
                "matched_fragments": 66,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerobutyricum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_016902345.1",
                "gtdb_species": "s__Mediterraneibacter glycyrrhizinilyticus_A",
                "ani": 80.1003,
                "matched_fragments": 58,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001940315.1",
                "gtdb_species": "s__Anaerostipes sp001940315",
                "ani": 79.3218,
                "matched_fragments": 268,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018918155.1",
                "gtdb_species": "s__Anaerostipes sp018918155",
                "ani": 79.1272,
                "matched_fragments": 251,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001404655.1",
                "gtdb_species": "s__Anaerostipes hadrus_A",
                "ani": 78.7726,
                "matched_fragments": 209,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_900756035.1",
                "gtdb_species": "s__Anaerostipes sp900756035",
                "ani": 78.6207,
                "matched_fragments": 213,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000210015.1",
                "gtdb_species": "s__Blautia_A obeum_B",
                "ani": 78.2661,
                "matched_fragments": 54,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_005280655.1",
                "gtdb_species": "s__Anaerostipes rhamnosivorans",
                "ani": 77.9818,
                "matched_fragments": 152,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000508985.1",
                "gtdb_species": "s__Anaerostipes sp000508985",
                "ani": 77.9745,
                "matched_fragments": 133,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000484655.1",
                "gtdb_species": "s__Blautia_A wexlerae",
                "ani": 77.6765,
                "matched_fragments": 68,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "96.15",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 140,
                "status": "-"
            },
            {
                "accession": "GCF_003574295.1",
                "gtdb_species": "s__Mediterraneibacter_A butyricigenes",
                "ani": 77.656,
                "matched_fragments": 66,
                "total_fragments": 1029,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 1.0,
        "cell_length": 0.698,
        "doubling_h": null,
        "growth_tmp": 40.0,
        "optimum_tmp": 39.0,
        "optimum_ph": 6.0,
        "genome_size": 3351944.437,
        "gc_content": 40.613,
        "coding_genes": 2835.5,
        "rRNA16S_genes": 9.0,
        "tRNA_genes": 70.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Anaerostipes",
        "butyraticus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}