{
    "type": "genome",
    "identifier": "GCF_016587375.1",
    "organism": "Ktedonobacter robiniae",
    "title": "Ktedonobacter robiniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Graduate School of Agricultural Science, Tohoku University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016587375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00251980",
        "wgs_master": "BNJG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2778365",
        "species_taxid": "2778365",
        "organism_name": "Ktedonobacter robiniae",
        "infraspecific_name": "strain=SOSP1-30",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/12/17",
        "asm_name": "ASM1658737v1",
        "asm_submitter": "Graduate School of Agricultural Science, Tohoku University",
        "gbrs_paired_asm": "GCA_016587375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/587/375/GCF_016587375.1_ASM1658737v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "10717923",
        "genome_size_ungapped": "10717923",
        "gc_percent": "53.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016587375.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "9329",
        "protein_coding_gene_count": "8994",
        "non_coding_gene_count": "89",
        "pubmed_id": "34296987"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-12-17",
    "dateModified": "2020-12-17",
    "datePublished": "2020-12-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ktedonobacter robiniae"
        ],
        "sample_taxid": [
            "2778365"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy:Gerenzano"
        ],
        "sample_host_location_id": [],
        "data_size": "3.053 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.48,
        "strain_heterogeneity": 83.33,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "10717923",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "4907184",
        "N50 (bp)": "2645227",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.7",
        "Number of CDSs": "9583",
        "Average Protein Length": "303.0",
        "Coding Ratio (%)": "81.3",
        "Number of rRNAs": "22",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "organism_name": "Ktedonobacter robiniae",
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                "relation_to_type": "type",
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            {
                "organism_name": "Ktedonobacter racemifer",
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                "taxid": 363277,
                "species_taxid": 363277,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 3568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ktedonospora formicarum",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reticulibacter mediterranei",
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                "accession": "GCA_016587455.1",
                "taxid": 2778369,
                "species_taxid": 2778369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6618,
                "matched_fragments": 383,
                "total_fragments": 3568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter arantiisoli",
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                "accession": "GCA_008326305.1",
                "taxid": 2014874,
                "species_taxid": 2014874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3951,
                "matched_fragments": 202,
                "total_fragments": 3568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tengunoibacter tsumagoiensis",
                "strain": "strain=Uno3",
                "accession": "GCA_003967535.1",
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                "species_taxid": 2014871,
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                "total_fragments": 3568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter kobayashii",
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                "species_taxid": 2014872,
                "relation_to_type": "type",
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                "ani": 78.0824,
                "matched_fragments": 244,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter vulcani",
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                "accession": "GCA_008974265.1",
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                "species_taxid": 2607529,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dictyobacter aurantiacus",
                "strain": "strain=S-27",
                "accession": "GCA_003967515.1",
                "taxid": 1936993,
                "species_taxid": 1936993,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4016,
                "matched_fragments": 285,
                "total_fragments": 3568,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 6.48,
            "strain_heterogeneity": 83.33
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        "gtdb_result": [
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                "accession": "GCF_016587375.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_016587415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Ktedonobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Ktedonobacter",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Ktedonobacter",
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                "mean_intra_species_ani": "N/A",
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            {
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            },
            {
                "accession": "GCA_011389075.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.0,
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}