{ "type": "genome", "identifier": "GCF_016587775.1", "organism": "Lactobacillus nasalidis", "title": "Lactobacillus nasalidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chubu University Academy of Emerging Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016587775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00264090", "wgs_master": "BOCG00000000.1", "refseq_category": "na", "taxid": "2797258", "species_taxid": "2797258", "organism_name": "Lactobacillus nasalidis", "infraspecific_name": "strain=YZ01", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/06", "asm_name": "ASM1658777v1", "asm_submitter": "Chubu University Academy of Emerging Sciences", "gbrs_paired_asm": "GCA_016587775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/587/775/GCF_016587775.1_ASM1658777v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2328194", "genome_size_ungapped": "2327986", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "728", "contig_count": "728", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016587775.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "2801", "protein_coding_gene_count": "2323", "non_coding_gene_count": "184", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-06", "dateModified": "2021-01-06", "datePublished": "2021-01-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus nasalidis" ], "sample_taxid": [ "2797258" ], "sample_host_organism": [ "Nasalis 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"min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_905214545.1", "gtdb_species": "s__Lactobacillus sp905214545", "ani": 78.1651, "matched_fragments": 88, "total_fragments": 509, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.148, "cell_length": 0.354, "doubling_h": -0.086, "growth_tmp": 32.808, "optimum_tmp": 31.646, "optimum_ph": 6.027, "genome_size": 2295637.558, "gc_content": 40.393, "coding_genes": 2119.007, "rRNA16S_genes": 5.074, "tRNA_genes": 63.614, "gram_stain": 1.0, "sporulation": 0.009, "motility": 0.08, "range_salinity": 0.0, "facultative_respiration": 0.155, "anaerobic_respiration": 0.175, 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