{ "type": "genome", "identifier": "GCF_016592155.1", "organism": "Mycobacterium heckeshornense", "title": "Mycobacterium heckeshornense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mycobacteriology, National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016592155.1", "bioproject": "PRJNA224116", "biosample": "SAMD00265704", "wgs_master": "na", "refseq_category": "na", "taxid": "110505", "species_taxid": "110505", "organism_name": "Mycobacterium heckeshornense", "infraspecific_name": "strain=JCM 15655", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/12/28", "asm_name": "ASM1659215v1", "asm_submitter": "Mycobacteriology, National Institute of Infectious Diseases", "gbrs_paired_asm": "GCA_016592155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/592/155/GCF_016592155.1_ASM1659215v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4957188", "genome_size_ungapped": "4957188", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-06", "total_gene_count": "4803", "protein_coding_gene_count": "4408", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-12-28", "dateModified": "2020-12-28", "datePublished": "2020-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium heckeshornense" ], "sample_taxid": [ "110505" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.362 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4957188", "Number of Sequences": "1", "Longest Sequences (bp)": "4957188", "N50 (bp)": "4957188", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "4868", "Average Protein Length": "306.8", "Coding Ratio (%)": "90.4", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium heckeshornense", "strain": "strain=JCM 15655", "accession": "GCA_016592155.1", "taxid": 110505, "species_taxid": 110505, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1651, "total_fragments": 1652, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium xenopi", "strain": "strain=DSM 43995", "accession": "GCA_002102015.1", "taxid": 1789, "species_taxid": 1789, "relation_to_type": "type", "validated": true, "ani": 90.4978, "matched_fragments": 1263, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium xenopi", "strain": "strain=JCM 15661T", "accession": "GCA_009936235.1", "taxid": 1789, "species_taxid": 1789, "relation_to_type": "type", "validated": true, "ani": 90.4007, "matched_fragments": 1305, "total_fragments": 1652, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium xenopi", "strain": "strain=NCTC10042", "accession": "GCA_900453395.1", "taxid": 1789, "species_taxid": 1789, "relation_to_type": "type", 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