{ "type": "genome", "identifier": "GCF_016595155.1", "organism": "Advenella mandrilli", "title": "Advenella mandrilli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "YUNNAN UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016595155.1", "bioproject": "PRJNA224116", "biosample": "SAMN17189439", "wgs_master": "JAENGP000000000.1", "refseq_category": "reference genome", "taxid": "2800330", "species_taxid": "2800330", "organism_name": "Advenella mandrilli", "infraspecific_name": "strain=WQ 585", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659515v1", "asm_submitter": "YUNNAN UNIVERSITY", "gbrs_paired_asm": "GCA_016595155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/155/GCF_016595155.1_ASM1659515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3277669", "genome_size_ungapped": "3277669", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-31", "total_gene_count": "3195", "protein_coding_gene_count": "3092", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Advenella mandrilli" ], "sample_taxid": [ "2800330" ], "sample_host_organism": [ "Nomascus leucogenys" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan Wildlife Park" ], "sample_host_location_id": [], "data_size": "0.932 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3277669", "Number of Sequences": "38", "Longest Sequences (bp)": "345770", "N50 (bp)": "181054", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.0", "Number of CDSs": "3070", "Average Protein Length": "317.8", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Advenella mandrilli", "strain": "strain=WQ 585", "accession": "GCA_016595155.1", "taxid": 2800330, "species_taxid": 2800330, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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noertemannii", "strain": "strain=DSM 10065", "accession": "GCA_003545825.1", "taxid": 305977, "species_taxid": 305977, "relation_to_type": "type", "validated": true, "ani": 76.4361, "matched_fragments": 60, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter anxifer", "strain": "strain=LMG 26857", "accession": "GCA_903652925.1", "taxid": 1287737, "species_taxid": 1287737, "relation_to_type": "type", "validated": true, "ani": 76.1839, "matched_fragments": 63, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pusillimonas faecipullorum", "strain": "strain=CC-YST705", "accession": "GCA_020539505.1", "taxid": 2755040, "species_taxid": 2755040, "relation_to_type": "type", "validated": true, "ani": 76.1019, "matched_fragments": 69, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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"GCF_014897675.1", "gtdb_species": "s__Advenella sp003533245", "ani": 77.4108, "matched_fragments": 162, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Advenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000521505.1", "gtdb_species": "s__Advenella mimigardefordensis", "ani": 77.3913, "matched_fragments": 176, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Advenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004217095.1", 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76.3866, "matched_fragments": 76, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012744285.1", "gtdb_species": "s__Pusillimonas_A sp012744285", "ani": 76.1688, "matched_fragments": 65, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.146, "cell_length": 0.188, "doubling_h": null, 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