{ "type": "genome", "identifier": "GCF_016595215.1", "organism": "Chryseobacterium paridis", "title": "Chryseobacterium paridis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016595215.1", "bioproject": "PRJNA224116", "biosample": "SAMN17189337", "wgs_master": "JAENHK000000000.1", "refseq_category": "reference genome", "taxid": "2800328", "species_taxid": "2800328", "organism_name": "Chryseobacterium paridis", "infraspecific_name": "strain=YIM B02567", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659521v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_016595215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/215/GCF_016595215.1_ASM1659521v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4774612", "genome_size_ungapped": "4773848", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016595215.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4254", "protein_coding_gene_count": "4176", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium paridis" ], "sample_taxid": [ "2800328" ], "sample_host_organism": [ "Paris polyphylla var. yunnanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.330 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4774612", "Number of Sequences": "12", "Longest Sequences (bp)": "2588358", "N50 (bp)": "2588358", "Gap Ratio (%)": "0.016001", "GCcontent (%)": "34.5", "Number of CDSs": "4149", "Average Protein Length": "335.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium paridis", "strain": "strain=YIM B02567", "accession": "GCA_016595215.1", "taxid": 2800328, 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80.0539, "matched_fragments": 683, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.0193, "matched_fragments": 754, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=NBRC 105248", "accession": "GCA_007991415.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.0042, "matched_fragments": 749, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 79.8881, "matched_fragments": 727, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 79.792, "matched_fragments": 732, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.7908, "matched_fragments": 692, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_003815775.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 79.756, "matched_fragments": 739, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lactis", "strain": "strain=NCTC11390", "accession": "GCA_002899875.1", "taxid": 1241981, "species_taxid": 1241981, "relation_to_type": "type", "validated": true, "ani": 79.673, "matched_fragments": 774, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.1694, "matched_fragments": 139, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.1582, "matched_fragments": 143, "total_fragments": 1586, "ani_threshold": 95, "status": "below_threshold" } ], 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