{ "type": "genome", "identifier": "GCF_016595245.1", "organism": "Azospirillum endophyticum", "title": "Azospirillum endophyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016595245.1", "bioproject": "PRJNA224116", "biosample": "SAMN17189351", "wgs_master": "JAENHM000000000.1", "refseq_category": "reference genome", "taxid": "2800326", "species_taxid": "2800326", "organism_name": "Azospirillum endophyticum", "infraspecific_name": "strain=YIM B02556", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659524v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_016595245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/245/GCF_016595245.1_ASM1659524v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8174113", "genome_size_ungapped": "8174100", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016595245.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "7388", "protein_coding_gene_count": "7218", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Azospirillum endophyticum" ], "sample_taxid": [ "2800326" ], "sample_host_organism": [ "Paris polyphylla var. yunnanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.228 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8174113", "Number of Sequences": "96", "Longest Sequences (bp)": "914197", "N50 (bp)": "167341", "Gap Ratio (%)": "0.000758", "GCcontent (%)": "67.9", "Number of CDSs": "7354", "Average Protein Length": "325.8", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "88", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, "species_taxid": 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90.7819, "matched_fragments": 2041, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oryzae", "strain": "strain=COC8", "accession": "GCA_008364795.1", "taxid": 286727, "species_taxid": 286727, "relation_to_type": "type", "validated": true, "ani": 90.699, "matched_fragments": 1770, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 89.546, "matched_fragments": 1680, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum humicireducens", "strain": "strain=SgZ-5", "accession": "GCA_001639105.2", "taxid": 1226968, "species_taxid": 1226968, "relation_to_type": "type", "validated": true, "ani": 89.4162, "matched_fragments": 1789, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=BV-S", "accession": "GCA_001305595.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 88.8619, "matched_fragments": 1866, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 88.8357, "matched_fragments": 1862, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 82.6716, "matched_fragments": 1366, "total_fragments": 2678, "ani_threshold": 95, "status": "below_threshold" }, { 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