{
    "type": "genome",
    "identifier": "GCF_016595415.1",
    "organism": "Roseibacillus ishigakijimensis",
    "title": "Roseibacillus ishigakijimensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016595415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17169596",
        "wgs_master": "JAENIO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "454146",
        "species_taxid": "454146",
        "organism_name": "Roseibacillus ishigakijimensis",
        "infraspecific_name": "strain=KCTC 12986",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/09",
        "asm_name": "ASM1659541v1",
        "asm_submitter": "Shandong university",
        "gbrs_paired_asm": "GCA_016595415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/415/GCF_016595415.1_ASM1659541v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4141563",
        "genome_size_ungapped": "4141563",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "192",
        "contig_count": "192",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016595415.1-RS_2024_05_12",
        "annotation_date": "2024-05-12",
        "total_gene_count": "3438",
        "protein_coding_gene_count": "3347",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-09",
    "dateModified": "2021-01-09",
    "datePublished": "2021-01-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseibacillus ishigakijimensis"
        ],
        "sample_taxid": [
            "454146"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.174 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4141563",
        "Number of Sequences": "192",
        "Longest Sequences (bp)": "210419",
        "N50 (bp)": "75133",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "3294",
        "Average Protein Length": "370.5",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
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                "organism_name": "Roseibacillus ishigakijimensis",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Roseibacillus persicicus",
                "strain": "strain=KCTC 12988",
                "accession": "GCA_014651675.1",
                "taxid": 454148,
                "species_taxid": 454148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0048,
                "matched_fragments": 364,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter ambystomatis",
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                "accession": "GCA_018137965.1",
                "taxid": 2824561,
                "species_taxid": 2824561,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter luteus",
                "strain": "strain=G-1-1-1",
                "accession": "GCA_012913485.1",
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                "species_taxid": 2728835,
                "relation_to_type": "type",
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                "ani": 76.5797,
                "matched_fragments": 86,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter yonseiensis",
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                "accession": "GCA_016595465.1",
                "taxid": 1144680,
                "species_taxid": 1144680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5243,
                "matched_fragments": 73,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Verrucomicrobium spinosum",
                "strain": "strain=DSM 4136",
                "accession": "GCA_000172155.1",
                "taxid": 2736,
                "species_taxid": 2736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2192,
                "matched_fragments": 55,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferula luteola",
                "strain": "strain=YC6886",
                "accession": "GCA_014201715.1",
                "taxid": 595692,
                "species_taxid": 595692,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1568,
                "matched_fragments": 67,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_016595415.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014904755.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_017798145.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_016811075.1",
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            },
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            },
            {
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__DEV007;g__Arctic95D-9",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.125,
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}