{ "type": "genome", "identifier": "GCF_016595435.1", "organism": "Luteolibacter pohnpeiensis", "title": "Luteolibacter pohnpeiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016595435.1", "bioproject": "PRJNA224116", "biosample": "SAMN17169591", "wgs_master": "JAENIJ000000000.1", "refseq_category": "reference genome", "taxid": "454153", "species_taxid": "454153", "organism_name": "Luteolibacter pohnpeiensis", "infraspecific_name": "strain=KCTC 22041", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659543v1", "asm_submitter": "Shandong university", "gbrs_paired_asm": "GCA_016595435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/435/GCF_016595435.1_ASM1659543v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4667805", "genome_size_ungapped": "4667805", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "254", "contig_count": "254", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016595435.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "4227", "protein_coding_gene_count": "4109", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteolibacter pohnpeiensis" ], "sample_taxid": [ "454153" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.334 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4667805", "Number of Sequences": "254", "Longest Sequences (bp)": "276121", "N50 (bp)": "104567", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.6", "Number of CDSs": "3937", "Average Protein Length": "338.9", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteolibacter pohnpeiensis", "strain": "strain=KCTC 22041", "accession": "GCA_016595435.1", "taxid": 454153, "species_taxid": 454153, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1459, 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"below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 76.6738, "matched_fragments": 165, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula luteola", "strain": "strain=YC6886", "accession": "GCA_014201715.1", "taxid": 595692, "species_taxid": 595692, "relation_to_type": "type", "validated": true, "ani": 76.56, "matched_fragments": 68, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016595435.1", "gtdb_species": "s__Luteolibacter pohnpeiensis", "ani": 100.0, "matched_fragments": 1459, "total_fragments": 1467, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002307065.1", "gtdb_species": "s__Luteolibacter sp002307065", "ani": 77.53, "matched_fragments": 187, "total_fragments": 1467, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016595465.1", "gtdb_species": "s__Luteolibacter yonseiensis", "ani": 77.2108, "matched_fragments": 189, "total_fragments": 1467, "gtdb_taxonomy": 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