{ "type": "genome", "identifier": "GCF_016595465.1", "organism": "Luteolibacter yonseiensis", "title": "Luteolibacter yonseiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016595465.1", "bioproject": "PRJNA224116", "biosample": "SAMN17169592", "wgs_master": "JAENIK000000000.1", "refseq_category": "reference genome", "taxid": "1144680", "species_taxid": "1144680", "organism_name": "Luteolibacter yonseiensis", "infraspecific_name": "strain=JCM 18052", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659546v1", "asm_submitter": "Shandong university", "gbrs_paired_asm": "GCA_016595465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/595/465/GCF_016595465.1_ASM1659546v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5727232", "genome_size_ungapped": "5727138", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016595465.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "4581", "protein_coding_gene_count": "4495", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteolibacter yonseiensis" ], "sample_taxid": [ "1144680" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.598 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5727232", "Number of Sequences": "13", "Longest Sequences (bp)": "1491316", "N50 (bp)": "939070", "Gap Ratio (%)": "0.001641", "GCcontent (%)": "60.6", "Number of CDSs": "4480", "Average Protein Length": "377.9", "Coding Ratio (%)": "88.7", "Number of rRNAs": "15", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1899, "total_fragments": 1906, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 78.0128, "matched_fragments": 343, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter luteus", "strain": "strain=G-1-1-1", "accession": "GCA_012913485.1", "taxid": 2728835, "species_taxid": 2728835, "relation_to_type": "type", "validated": true, "ani": 77.3885, "matched_fragments": 266, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 77.188, "matched_fragments": 147, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter pohnpeiensis", "strain": "strain=KCTC 22041", "accession": "GCA_016595435.1", "taxid": 454153, "species_taxid": 454153, "relation_to_type": "type", "validated": true, "ani": 77.0034, "matched_fragments": 202, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula luteola", "strain": "strain=YC6886", "accession": "GCA_014201715.1", "taxid": 595692, "species_taxid": 595692, "relation_to_type": "type", "validated": true, "ani": 76.7557, "matched_fragments": 110, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.733, "matched_fragments": 86, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacillus ishigakijimensis", "strain": "strain=KCTC 12986", "accession": "GCA_016595415.1", "taxid": 454146, "species_taxid": 454146, "relation_to_type": "type", "validated": true, "ani": 76.5251, "matched_fragments": 70, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=Ellin428", "accession": "GCA_000173075.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 76.0355, "matched_fragments": 91, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.7922, "matched_fragments": 90, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zhihengii", "strain": "strain=YIM T102", "accession": "GCA_016919245.1", "taxid": 1818004, "species_taxid": 1818004, "relation_to_type": "type", "validated": true, "ani": 75.6715, "matched_fragments": 64, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 75.5738, "matched_fragments": 78, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 75.07, "matched_fragments": 56, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016595465.1", "gtdb_species": "s__Luteolibacter yonseiensis", "ani": 100.0, "matched_fragments": 1900, "total_fragments": 1906, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003820635.1", "gtdb_species": "s__Luteolibacter sp003820635", "ani": 78.7105, "matched_fragments": 342, "total_fragments": 1906, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Luteolibacter", "yonseiensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }