{ "type": "genome", "identifier": "GCF_016598475.1", "organism": "Streptomyces adelaidensis", "title": "Streptomyces adelaidensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mahasarakham University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016598475.1", "bioproject": "PRJNA224116", "biosample": "SAMN16949555", "wgs_master": "JAEMUX000000000.1", "refseq_category": "reference genome", "taxid": "2796465", "species_taxid": "2796465", "organism_name": "Streptomyces adelaidensis", "infraspecific_name": "strain=CAP261", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/09", "asm_name": "ASM1659847v1", "asm_submitter": "Mahasarakham University", "gbrs_paired_asm": "GCA_016598475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/598/475/GCF_016598475.1_ASM1659847v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9321252", "genome_size_ungapped": "9321252", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "352", "contig_count": "352", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016598475.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8550", "protein_coding_gene_count": "8049", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-09", "dateModified": "2021-01-09", "datePublished": "2021-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces adelaidensis" ], "sample_taxid": [ "2796465" ], "sample_host_organism": [ "Callitris preissii (native pine tree)" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Flinders University, Bedford park, Adelaide", "Incubator" ], "sample_host_location_id": [], "data_size": "2.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 20.0, "max": 38.0 }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9321252", "Number of Sequences": "352", "Longest Sequences (bp)": "215184", "N50 (bp)": "83341", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "8434", "Average Protein Length": "316.8", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "88", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces adelaidensis", "strain": "strain=CAP261", "accession": "GCA_016598475.1", "taxid": 2796465, "species_taxid": 2796465, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2943, "total_fragments": 2958, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces brasiliscabiei", "strain": "strain=IBSBF 2867", "accession": "GCA_018927715.1", "taxid": 2736302, "species_taxid": 2736302, "relation_to_type": "type", "validated": true, "ani": 89.2209, "matched_fragments": 2098, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeolivaceus", "strain": "strain=GY16", "accession": "GCA_009184865.1", "taxid": 2653200, "species_taxid": 2653200, "relation_to_type": "type", "validated": true, "ani": 89.2168, "matched_fragments": 2216, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces deccanensis", "strain": "strain=KCTC 19241", "accession": "GCA_022385335.1", "taxid": 424188, "species_taxid": 424188, "relation_to_type": "type", "validated": true, "ani": 89.1893, "matched_fragments": 2209, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bottropensis", "strain": "strain=ATCC 25435", "accession": "GCA_000340335.2", "taxid": 42235, "species_taxid": 42235, "relation_to_type": "type", "validated": true, "ani": 89.0967, "matched_fragments": 2109, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bottropensis", "strain": "strain=ATCC 25435", "accession": "GCA_000383595.1", "taxid": 42235, "species_taxid": 42235, "relation_to_type": "type", "validated": true, "ani": 89.0497, "matched_fragments": 2115, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniscabiei", "strain": "strain=NE06-02D", "accession": "GCA_014930365.1", "taxid": 2746961, "species_taxid": 2746961, "relation_to_type": "type", "validated": true, "ani": 88.9942, "matched_fragments": 2248, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tailanensis", "strain": "strain=TRM68348", "accession": "GCA_008386495.1", "taxid": 2569858, "species_taxid": 2569858, "relation_to_type": "type", "validated": true, "ani": 88.7716, "matched_fragments": 2143, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces capitiformicae", "strain": "strain=CGMCC 4.7403", "accession": "GCA_014653855.1", "taxid": 2014920, "species_taxid": 2014920, "relation_to_type": "type", "validated": true, "ani": 88.5531, "matched_fragments": 2121, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces capitiformicae", "strain": "strain=1H-SSA4", "accession": "GCA_002214185.1", "taxid": 2014920, "species_taxid": 2014920, "relation_to_type": "type", "validated": true, "ani": 88.4341, "matched_fragments": 2134, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces torulosus", "strain": "strain=NRRL B-3889", "accession": "GCA_001419765.1", "taxid": 68276, "species_taxid": 68276, "relation_to_type": "type", "validated": true, "ani": 87.7534, "matched_fragments": 1704, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces neyagawaensis", "strain": "strain=JCM 4796", "accession": "GCA_023516595.1", "taxid": 42238, "species_taxid": 42238, "relation_to_type": "type", "validated": true, "ani": 87.5371, "matched_fragments": 2073, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 84.4475, "matched_fragments": 1880, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 84.2583, "matched_fragments": 1919, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeofaciens", "strain": "strain=JCM 4125", "accession": "GCA_014648915.1", "taxid": 68254, "species_taxid": 68254, "relation_to_type": "type", "validated": true, "ani": 83.9714, "matched_fragments": 1813, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lacrimifluminis", "strain": "strain=CGMCC 4.7272", "accession": "GCA_014646095.1", "taxid": 1500077, "species_taxid": 1500077, "relation_to_type": "type", "validated": true, "ani": 83.8821, "matched_fragments": 1814, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces geranii", "strain": "strain=A301", "accession": "GCA_002954775.1", "taxid": 2058923, "species_taxid": 2058923, "relation_to_type": "type", "validated": true, "ani": 83.7711, "matched_fragments": 1784, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces adustus", "strain": "strain=NBRC 109810", "accession": "GCA_009377175.1", "taxid": 1609272, "species_taxid": 1609272, "relation_to_type": "type", "validated": true, "ani": 83.6727, "matched_fragments": 1541, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hokutonensis", "strain": "strain=R1-NS-10", "accession": "GCA_000376565.1", "taxid": 1306990, "species_taxid": 1306990, "relation_to_type": "type", "validated": true, "ani": 83.6657, "matched_fragments": 1832, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fructofermentans", "strain": "strain=JCM 4956", "accession": "GCA_014651055.1", "taxid": 152141, "species_taxid": 152141, "relation_to_type": "type", "validated": true, "ani": 83.2517, "matched_fragments": 1693, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gobiensis", "strain": "strain=1_25", "accession": "GCA_021216675.1", "taxid": 2875706, "species_taxid": 2875706, "relation_to_type": "type", "validated": true, "ani": 79.5521, "matched_fragments": 856, "total_fragments": 2958, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016598475.1", "gtdb_species": "s__Streptomyces adelaidensis", "ani": 100.0, "matched_fragments": 2943, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001550375.1", "gtdb_species": "s__Streptomyces europaeiscabiei", "ani": 89.7527, "matched_fragments": 1964, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "96.30", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009184865.1", "gtdb_species": "s__Streptomyces phaeolivaceus", "ani": 89.2342, "matched_fragments": 2213, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018927715.1", "gtdb_species": "s__Streptomyces brasiliscabiei", "ani": 89.2124, "matched_fragments": 2100, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000772895.1", "gtdb_species": "s__Streptomyces galbus_A", "ani": 89.152, "matched_fragments": 2216, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000383595.1", "gtdb_species": "s__Streptomyces bottropensis", "ani": 89.0775, "matched_fragments": 2111, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.7549, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900114955.1", "gtdb_species": "s__Streptomyces sp900114955", "ani": 89.0365, "matched_fragments": 2212, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_014873495.1", "gtdb_species": "s__Streptomyces stelliscabiei", "ani": 89.0216, "matched_fragments": 2168, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 96.7549, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.68", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014203845.1", "gtdb_species": "s__Streptomyces scabiei_E", "ani": 88.809, "matched_fragments": 2100, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.38", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008386495.1", "gtdb_species": "s__Streptomyces tailanensis", "ani": 88.7828, "matched_fragments": 2141, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002214185.1", "gtdb_species": "s__Streptomyces capitiformicae", "ani": 88.455, "matched_fragments": 2131, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000718165.1", "gtdb_species": "s__Streptomyces fulvoviolaceus", "ani": 84.499, "matched_fragments": 1934, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001514305.1", "gtdb_species": "s__Streptomyces dysideae", "ani": 84.4721, "matched_fragments": 1876, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008905045.1", "gtdb_species": "s__Streptomyces albicerus", "ani": 84.2816, "matched_fragments": 1884, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648915.1", "gtdb_species": "s__Streptomyces phaeofaciens", "ani": 83.9844, "matched_fragments": 1810, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009377175.1", "gtdb_species": "s__Streptomyces adustus", "ani": 83.6882, "matched_fragments": 1538, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005222485.1", "gtdb_species": "s__Streptomyces griseoviridis_A", "ani": 83.3421, "matched_fragments": 1629, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900091845.1", "gtdb_species": "s__Streptomyces sp900091845", "ani": 83.1495, "matched_fragments": 1544, "total_fragments": 2958, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "adelaidensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }