{ "type": "genome", "identifier": "GCF_016613535.2", "organism": "Agrilutibacter solisilvae", "title": "Agrilutibacter solisilvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016613535.2", "bioproject": "PRJNA224116", "biosample": "SAMN17035973", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2763317", "species_taxid": "2763317", "organism_name": "Agrilutibacter solisilvae", "infraspecific_name": "strain=R19", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/15", "asm_name": "ASM1661353v2", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_016613535.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/613/535/GCF_016613535.2_ASM1661353v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3933292", "genome_size_ungapped": "3933292", "gc_percent": "69.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016613535.2-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3499", "protein_coding_gene_count": "3240", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-15", "dateModified": "2021-03-15", "datePublished": "2021-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "\"Lysobacter solisilvae\"" ], "sample_taxid": [ "2763317" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gangwon-do, Yeongwol" ], "sample_host_location_id": [], "data_size": "1.058 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3933292", "Number of Sequences": "1", "Longest Sequences (bp)": "3933292", "N50 (bp)": "3933292", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "3539", "Average Protein Length": "321.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter solisilvae", "strain": "strain=R19", "accession": "GCA_016613535.2", "taxid": 2763317, "species_taxid": 2763317, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1310, "total_fragments": 1311, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter terrestris", "strain": "strain=II4", "accession": "GCA_014489475.1", "taxid": 2865112, "species_taxid": 2865112, "relation_to_type": "type", "validated": true, "ani": 83.5945, "matched_fragments": 774, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.2457, "matched_fragments": 666, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.2243, "matched_fragments": 636, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 82.1539, "matched_fragments": 744, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 81.9551, "matched_fragments": 681, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 81.8622, "matched_fragments": 698, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 81.5698, "matched_fragments": 610, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.5689, "matched_fragments": 691, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 81.5628, "matched_fragments": 690, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter daejeonensis", "strain": "strain=GH1-9", "accession": "GCA_000768355.1", "taxid": 346181, "species_taxid": 346181, "relation_to_type": "type", "validated": true, "ani": 81.4524, "matched_fragments": 589, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter enzymogenes", "strain": "strain=ATCC 29487", "accession": "GCA_900106525.1", "taxid": 69, "species_taxid": 69, "relation_to_type": "suspected-type", "validated": true, "ani": 81.4161, "matched_fragments": 761, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 81.2294, "matched_fragments": 587, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 81.1492, "matched_fragments": 600, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 81.0329, "matched_fragments": 577, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 81.015, "matched_fragments": 650, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 80.9977, "matched_fragments": 581, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 80.8825, "matched_fragments": 730, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 80.7206, "matched_fragments": 627, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter dokdonensis", "strain": "strain=DS-58", "accession": "GCA_000770795.1", "taxid": 414050, "species_taxid": 414050, "relation_to_type": "type", "validated": true, "ani": 80.524, "matched_fragments": 548, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas fusca", "strain": "strain=DSM 15424", "accession": "GCA_000423885.1", "taxid": 215690, "species_taxid": 215690, "relation_to_type": "type", "validated": true, "ani": 80.4539, "matched_fragments": 555, "total_fragments": 1311, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016613535.2", "gtdb_species": "s__Lysobacter solisilvae_A", "ani": 100.0, "matched_fragments": 1310, "total_fragments": 1311, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014489475.1", 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null, "spiral_cell_shape": null }, "_genome_taxon": [ "Agrilutibacter", "solisilvae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }