{
    "type": "genome",
    "identifier": "GCF_016617615.1",
    "organism": "Persephonella atlantica",
    "title": "Persephonella atlantica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ifremer",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016617615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13886004",
        "wgs_master": "JAACYA000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2699429",
        "species_taxid": "2699429",
        "organism_name": "Persephonella atlantica",
        "infraspecific_name": "strain=MO1340",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/11",
        "asm_name": "ASM1661761v1",
        "asm_submitter": "Ifremer",
        "gbrs_paired_asm": "GCA_016617615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/617/615/GCF_016617615.1_ASM1661761v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1892283",
        "genome_size_ungapped": "1892283",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016617615.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "2042",
        "protein_coding_gene_count": "1992",
        "non_coding_gene_count": "46",
        "pubmed_id": "33422731"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-11",
    "dateModified": "2021-01-11",
    "datePublished": "2021-01-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Persephonella atlantica"
        ],
        "sample_taxid": [
            "2699429"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "0.523 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1892283",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "966360",
        "N50 (bp)": "966360",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.1",
        "Number of CDSs": "1989",
        "Average Protein Length": "302.2",
        "Coding Ratio (%)": "95.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Persephonella atlantica",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_900215515.1",
                "taxid": 198703,
                "species_taxid": 198703,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 284,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Persephonella marina",
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                "accession": "GCA_000021565.1",
                "taxid": 309805,
                "species_taxid": 309805,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 174,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenothermus marinus",
                "strain": "strain=VM1",
                "accession": "GCA_003688665.1",
                "taxid": 133270,
                "species_taxid": 133270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5126,
                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurihydrogenibium azorense",
                "strain": "strain=Az-Fu1",
                "accession": "GCA_000021545.1",
                "taxid": 309806,
                "species_taxid": 309806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.409,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurihydrogenibium subterraneum",
                "strain": "strain=DSM 15120",
                "accession": "GCA_000619805.1",
                "taxid": 171121,
                "species_taxid": 171121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.103,
                "matched_fragments": 60,
                "total_fragments": 630,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016617615.1",
                "gtdb_species": "s__Persephonella atlantica",
                "ani": 100.0,
                "matched_fragments": 629,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
                "accession": "GCA_015487465.1",
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                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000703085.1",
                "gtdb_species": "s__Persephonella sp000703085",
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                "matched_fragments": 239,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000703045.1",
                "gtdb_species": "s__Persephonella sp000703045",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__Persephonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000021565.1",
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                "mean_intra_species_ani": "100.00",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_013153795.1",
                "gtdb_species": "s__JAADDV01 sp013153795",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Hydrogenothermales;f__Hydrogenothermaceae;g__JAADDV01",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_015519975.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
        "doubling_h": 0.666,
        "growth_tmp": 70.05,
        "optimum_tmp": null,
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        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": null,
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        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
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        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Persephonella",
        "atlantica"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}