{ "type": "genome", "identifier": "GCF_016623495.1", "organism": "Thermohalobaculum xanthum", "title": "Thermohalobaculum xanthum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi Academy of Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016623495.1", "bioproject": "PRJNA224116", "biosample": "SAMN15522258", "wgs_master": "JAEHHL000000000.1", "refseq_category": "reference genome", "taxid": "2753746", "species_taxid": "2753746", "organism_name": "Thermohalobaculum xanthum", "infraspecific_name": "strain=M0105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/05", "asm_name": "ASM1662349v1", "asm_submitter": "Guangxi Academy of Science", "gbrs_paired_asm": "GCA_016623495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/623/495/GCF_016623495.1_ASM1662349v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4055176", "genome_size_ungapped": "4055176", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016623495.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3872", "protein_coding_gene_count": "3789", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-05", "dateModified": "2021-01-05", "datePublished": "2021-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermohalobaculum xanthum" ], "sample_taxid": [ "2753746" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi" ], "sample_host_location_id": [], "data_size": "1.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4055176", "Number of Sequences": "34", "Longest Sequences (bp)": "1070915", "N50 (bp)": "318202", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3834", "Average Protein Length": "314.7", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermohalobaculum xanthum", "strain": "strain=M0105", "accession": "GCA_016623495.1", "taxid": 2753746, "species_taxid": 2753746, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1336, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 78.8973, "matched_fragments": 424, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum dunhuangense", "strain": "strain=YYQ-30", "accession": "GCA_013093415.1", "taxid": 1505036, "species_taxid": 1505036, "relation_to_type": "type", "validated": true, "ani": 78.2685, "matched_fragments": 365, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 78.1355, "matched_fragments": 443, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 78.1087, "matched_fragments": 404, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amaricoccus solimangrovi", "strain": "strain=HB172011", "accession": "GCA_006385685.1", "taxid": 2589815, "species_taxid": 2589815, "relation_to_type": "type", "validated": true, "ani": 78.091, "matched_fragments": 385, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.0385, "matched_fragments": 330, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coraliihabitans acroporae", "strain": "strain=NNCM2", "accession": "GCA_019891535.1", "taxid": 2834412, "species_taxid": 2834412, "relation_to_type": "type", "validated": true, "ani": 77.9993, "matched_fragments": 404, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 77.8982, "matched_fragments": 349, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 77.8618, "matched_fragments": 428, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=DSM 24422", "accession": "GCA_003001835.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 77.8181, "matched_fragments": 306, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 77.7741, "matched_fragments": 279, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrimonas cliftonensis", "strain": "strain=DSM 15345", "accession": "GCA_900107585.1", "taxid": 89524, "species_taxid": 89524, "relation_to_type": "type", "validated": true, "ani": 77.749, "matched_fragments": 457, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 77.7242, "matched_fragments": 283, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola cinnabarinus", "strain": "strain=LL-001", "accession": "GCA_000466965.1", "taxid": 1125964, "species_taxid": 1125964, "relation_to_type": "type", "validated": true, "ani": 77.6972, "matched_fragments": 281, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum visakhapatnamense", "strain": "strain=JA181", "accession": "GCA_004365965.1", "taxid": 364297, "species_taxid": 364297, "relation_to_type": "type", "validated": true, "ani": 77.5663, "matched_fragments": 342, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 77.5573, "matched_fragments": 311, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.4874, "matched_fragments": 293, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.3122, "matched_fragments": 277, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.277, "matched_fragments": 300, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 77.1586, "matched_fragments": 263, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=CECT 7751", "accession": "GCA_900172385.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 77.1218, "matched_fragments": 271, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016623495.1", "gtdb_species": "s__Limibaculum sp016623495", "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Limibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008124525.1", "gtdb_species": "s__Oceanicella actignis", "ani": 78.8729, "matched_fragments": 427, "total_fragments": 1336, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Oceanicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900113695.1", "gtdb_species": "s__Albimonas pacifica", "ani": 78.2261, "matched_fragments": 489, "total_fragments": 1336, "gtdb_taxonomy": 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