{ "type": "genome", "identifier": "GCF_016629665.1", "organism": "Paracoccus caeni", "title": "Paracoccus caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016629665.1", "bioproject": "PRJNA224116", "biosample": "SAMN17249363", "wgs_master": "JAEPRQ000000000.1", "refseq_category": "reference genome", "taxid": "657651", "species_taxid": "657651", "organism_name": "Paracoccus caeni", "infraspecific_name": "strain=MJ17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/13", "asm_name": "ASM1662966v1", "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_016629665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/629/665/GCF_016629665.1_ASM1662966v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4193531", "genome_size_ungapped": "4193531", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016629665.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4056", "protein_coding_gene_count": "3957", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-13", "dateModified": "2021-01-13", "datePublished": "2021-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus caeni" ], "sample_taxid": [ "657651" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.161 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4193531", "Number of Sequences": "20", "Longest Sequences (bp)": "1380340", "N50 (bp)": "537042", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "3999", "Average Protein Length": "314.3", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus caeni", "strain": "strain=MJ17", "accession": "GCA_016629665.1", "taxid": 657651, "species_taxid": 657651, 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"matched_fragments": 700, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 80.8692, "matched_fragments": 681, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus homiensis", "strain": "strain=DSM 17862", "accession": "GCA_900111675.1", "taxid": 364199, "species_taxid": 364199, "relation_to_type": "type", "validated": true, "ani": 80.7729, "matched_fragments": 613, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 80.6541, "matched_fragments": 669, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus lichenicola", "strain": "strain=YIM 132242", "accession": "GCA_009708075.1", "taxid": 2665644, "species_taxid": 2665644, "relation_to_type": "type", "validated": true, "ani": 80.6359, "matched_fragments": 658, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_014656455.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 80.62, "matched_fragments": 672, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zhejiangensis", "strain": "strain=J6", "accession": "GCA_002847445.1", "taxid": 1077935, "species_taxid": 1077935, "relation_to_type": "type", "validated": true, "ani": 80.5339, "matched_fragments": 650, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus everestensis", "strain": "strain=S8-55", "accession": "GCA_021491915.1", "taxid": 2903900, "species_taxid": 2903900, "relation_to_type": "type", "validated": true, "ani": 80.4174, "matched_fragments": 620, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 80.4078, "matched_fragments": 618, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aestuarii", "strain": "strain=DSM 19484", "accession": "GCA_003594815.1", "taxid": 453842, "species_taxid": 453842, "relation_to_type": "type", "validated": true, "ani": 80.29, "matched_fragments": 566, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus amoyensis", "strain": 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