{
    "type": "genome",
    "identifier": "GCF_016638705.1",
    "organism": "Lysinibacillus agricola",
    "title": "Lysinibacillus agricola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Fujian Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016638705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12084234",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2590012",
        "species_taxid": "2590012",
        "organism_name": "Lysinibacillus agricola",
        "infraspecific_name": "strain=FJAT-51161",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/14",
        "asm_name": "ASM1663870v1",
        "asm_submitter": "Fujian Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_016638705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/638/705/GCF_016638705.1_ASM1663870v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5285903",
        "genome_size_ungapped": "5285903",
        "gc_percent": "36.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016638705.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "5375",
        "protein_coding_gene_count": "5067",
        "non_coding_gene_count": "130",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-14",
    "dateModified": "2021-01-14",
    "datePublished": "2021-01-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysinibacillus agricola"
        ],
        "sample_taxid": [
            "2590012"
        ],
        "sample_host_organism": [
            "soil"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Fujian"
        ],
        "sample_host_location_id": [],
        "data_size": "1.483 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.55,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5285903",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5285903",
        "N50 (bp)": "5285903",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.7",
        "Number of CDSs": "5318",
        "Average Protein Length": "263.1",
        "Coding Ratio (%)": "79.4",
        "Number of rRNAs": "34",
        "Number of tRNAs": "91",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lysinibacillus agricola",
                "strain": "strain=FJAT-51161",
                "accession": "GCA_016638705.1",
                "taxid": 2590012,
                "species_taxid": 2590012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1761,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus xylanilyticus",
                "strain": "strain=DSM 23493",
                "accession": "GCA_001183605.1",
                "taxid": 582475,
                "species_taxid": 582475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.7891,
                "matched_fragments": 1239,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus cavernae",
                "strain": "strain=SYSU K30005",
                "accession": "GCA_009724685.1",
                "taxid": 2666135,
                "species_taxid": 2666135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5146,
                "matched_fragments": 895,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus parviboronicapiens",
                "strain": "strain=BAM-582",
                "accession": "GCA_003049575.1",
                "taxid": 436516,
                "species_taxid": 436516,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2642,
                "matched_fragments": 880,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus tabacifolii",
                "strain": "strain=KCTC 33042",
                "accession": "GCA_005217585.1",
                "taxid": 1173107,
                "species_taxid": 1173107,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.2211,
                "matched_fragments": 741,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus tabacifolii",
                "strain": "strain=K3514",
                "accession": "GCA_003049565.1",
                "taxid": 1173107,
                "species_taxid": 1173107,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.1548,
                "matched_fragments": 756,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=M-GX18",
                "accession": "GCA_003049665.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0571,
                "matched_fragments": 789,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus mangiferihumi",
                "strain": "strain=CCTCC AB 2010389",
                "accession": "GCA_005217845.1",
                "taxid": 1130819,
                "species_taxid": 1130819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0329,
                "matched_fragments": 779,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus macroides",
                "strain": "strain=DSM 54",
                "accession": "GCA_001281525.1",
                "taxid": 33935,
                "species_taxid": 33935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8725,
                "matched_fragments": 754,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=NBRC 15717",
                "accession": "GCA_006540205.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.831,
                "matched_fragments": 857,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
                "strain": "strain=DSM 25560",
                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4216,
                "matched_fragments": 553,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=DSM 2048",
                "accession": "GCA_022630575.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4097,
                "matched_fragments": 113,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citri",
                "strain": "strain=FJAT-49780",
                "accession": "GCA_018343625.1",
                "taxid": 2833580,
                "species_taxid": 2833580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6427,
                "matched_fragments": 56,
                "total_fragments": 1761,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.55,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016638705.1",
                "gtdb_species": "s__Lysinibacillus sp001278875",
                "ani": 100.0,
                "matched_fragments": 1761,
                "total_fragments": 1761,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
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                "gtdb_species": "s__Lysinibacillus sp001275675",
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                "matched_fragments": 1196,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001183605.1",
                "gtdb_species": "s__Lysinibacillus xylanilyticus",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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                "mean_intra_species_ani": "97.05",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_006864135.1",
                "gtdb_species": "s__Lysinibacillus sp006864135",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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                "mean_intra_species_ani": "95.97",
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            },
            {
                "accession": "GCF_002237755.1",
                "gtdb_species": "s__Lysinibacillus sp002237755",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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            },
            {
                "accession": "GCF_001708185.1",
                "gtdb_species": "s__Lysinibacillus xylanilyticus_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.083,
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        "doubling_h": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "agricola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}