{
    "type": "genome",
    "identifier": "GCF_016649425.1",
    "organism": "Limnobaculum allomyrinae",
    "title": "Limnobaculum allomyrinae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "BioPS Co., Ltd.",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016649425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16843547",
        "wgs_master": "JADRCR000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2791986",
        "species_taxid": "2791986",
        "organism_name": "Limnobaculum allomyrinae",
        "infraspecific_name": "strain=BWR-B9",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/15",
        "asm_name": "ASM1664942v1",
        "asm_submitter": "BioPS Co., Ltd.",
        "gbrs_paired_asm": "GCA_016649425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/649/425/GCF_016649425.1_ASM1664942v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4577800",
        "genome_size_ungapped": "4577217",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016649425.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4120",
        "protein_coding_gene_count": "3967",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-15",
    "dateModified": "2021-01-15",
    "datePublished": "2021-01-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limnobaculum allomyrinae"
        ],
        "sample_taxid": [
            "2791986"
        ],
        "sample_host_organism": [
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        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Jeju"
        ],
        "sample_host_location_id": [],
        "data_size": "1.299 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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    "_dfast": {
        "Total Sequence Length (bp)": "4577800",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "938212",
        "N50 (bp)": "346778",
        "Gap Ratio (%)": "0.012735",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "4055",
        "Average Protein Length": "321.8",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Jinshanibacter allomyrinae",
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            {
                "organism_name": "Jinshanibacter zhutongyuii",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
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                "accession": "GCA_900112475.1",
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                "relation_to_type": "type",
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            },
            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Budvicia aquatica",
                "strain": "strain=NCTC12282",
                "accession": "GCA_900706715.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Budvicia aquatica",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Leminorella grimontii",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
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                "accession": "GCA_014946775.2",
                "taxid": 2774015,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium colocasium",
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                "taxid": 2878098,
                "species_taxid": 2878098,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Enterobacter cloacae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia massiliensis",
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                "accession": "GCA_000312485.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
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            }
        ],
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                "accession": "GCA_016649425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Limnobaculum",
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        ]
    },
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}