{ "type": "genome", "identifier": "GCF_016653295.1", "organism": "Halochromatium salexigens", "title": "Halochromatium salexigens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016653295.1", "bioproject": "PRJNA224116", "biosample": "SAMN07156356", "wgs_master": "NHSF00000000.1", "refseq_category": "reference genome", "taxid": "49447", "species_taxid": "49447", "organism_name": "Halochromatium salexigens", "infraspecific_name": "strain=DSM 4395", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/16", "asm_name": "ASM1665329v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016653295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/653/295/GCF_016653295.1_ASM1665329v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3828867", "genome_size_ungapped": "3828178", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "100", "contig_count": "100", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016653295.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3672", "protein_coding_gene_count": "3535", "non_coding_gene_count": "55", "pubmed_id": "33375353" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-16", "dateModified": "2021-01-16", "datePublished": "2021-01-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Halochromatium salexigens" ], "sample_taxid": [ "49447" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: near Salin de Giraud" ], "sample_host_location_id": [], "data_size": "1.066 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3828867", "Number of Sequences": "100", "Longest Sequences (bp)": "477736", "N50 (bp)": "66939", "Gap Ratio (%)": "0.018204", "GCcontent (%)": "63.7", "Number of CDSs": "3546", "Average Protein Length": "317.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halochromatium salexigens", "strain": "strain=DSM 4395", "accession": "GCA_016653295.1", "taxid": 49447, 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"validated": true, "ani": 78.933, "matched_fragments": 418, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 78.5645, "matched_fragments": 340, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa halophila", "strain": "strain=DSM 6210", "accession": "GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 78.5494, "matched_fragments": 475, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium vinosum", "strain": "strain=DSM 180", "accession": "GCA_000025485.1", "taxid": 1049, "species_taxid": 1049, "relation_to_type": "type", "validated": true, "ani": 78.4881, "matched_fragments": 345, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 78.3851, "matched_fragments": 351, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa rosea", "strain": "strain=DSM 235", "accession": "GCA_003634315.1", "taxid": 69360, "species_taxid": 69360, "relation_to_type": "type", "validated": true, "ani": 77.7545, "matched_fragments": 317, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 77.5623, "matched_fragments": 264, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio nitratireducens", "strain": "strain=DSM 14787", "accession": "GCA_000321415.2", "taxid": 186931, "species_taxid": 186931, "relation_to_type": "type", "validated": true, "ani": 76.9366, "matched_fragments": 124, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, "relation_to_type": "type", "validated": true, "ani": 76.4711, "matched_fragments": 142, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.4438, "matched_fragments": 117, "total_fragments": 1227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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