{ "type": "genome", "identifier": "GCF_016653305.1", "organism": "Rhodovulum imhoffii", "title": "Rhodovulum imhoffii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016653305.1", "bioproject": "PRJNA224116", "biosample": "SAMN07156353", "wgs_master": "NHSI00000000.1", "refseq_category": "na", "taxid": "365340", "species_taxid": "365340", "organism_name": "Rhodovulum imhoffii", "infraspecific_name": "strain=DSM 18064", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/16", "asm_name": "ASM1665330v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016653305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/653/305/GCF_016653305.1_ASM1665330v1", 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"sample_host_location": [ "India: Bhimunipatnam" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2861316", "Number of Sequences": "66", "Longest Sequences (bp)": "224412", "N50 (bp)": "72404", "Gap Ratio (%)": "0.010345", "GCcontent (%)": "63.2", "Number of CDSs": "2822", "Average Protein Length": "304.7", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodovulum imhoffii", "strain": "strain=DSM 18064", "accession": "GCA_016653305.1", "taxid": 365340, "species_taxid": 365340, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 912, 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"matched_fragments": 217, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovicoccus algicola", "strain": "strain=HB182678", "accession": "GCA_014903745.1", "taxid": 2771008, "species_taxid": 2771008, "relation_to_type": "type", "validated": true, "ani": 77.1736, "matched_fragments": 234, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 77.1314, "matched_fragments": 205, "total_fragments": 920, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 77.0865, "matched_fragments": 215, "total_fragments": 920, 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