{ "type": "genome", "identifier": "GCF_016653315.1", "organism": "Halochromatium roseum", "title": "Halochromatium roseum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016653315.1", "bioproject": "PRJNA224116", "biosample": "SAMN07156354", "wgs_master": "NHSH00000000.1", "refseq_category": "reference genome", "taxid": "391920", "species_taxid": "391920", "organism_name": "Halochromatium roseum", "infraspecific_name": "strain=DSM 18859", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/16", "asm_name": "ASM1665331v1", "asm_submitter": "GEOMAR Helmholtz Centre for Ocean Research Kiel", "gbrs_paired_asm": "GCA_016653315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/653/315/GCF_016653315.1_ASM1665331v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5173123", "genome_size_ungapped": "5172240", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "88", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016653315.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4850", "protein_coding_gene_count": "4707", "non_coding_gene_count": "50", "pubmed_id": "33375353" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-16", "dateModified": "2021-01-16", "datePublished": "2021-01-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Halochromatium roseum" ], "sample_taxid": [ "391920" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Kakinada" ], "sample_host_location_id": [], "data_size": "1.447 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5173123", "Number of Sequences": "88", "Longest Sequences (bp)": "403834", "N50 (bp)": "143744", "Gap Ratio (%)": "0.017224", "GCcontent (%)": "61.9", "Number of CDSs": "4754", "Average Protein Length": "315.1", "Coding Ratio (%)": "86.9", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halochromatium roseum", "strain": "strain=DSM 18859", "accession": "GCA_016653315.1", "taxid": 391920, "species_taxid": 391920, 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95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 77.8885, "matched_fragments": 377, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 77.6859, "matched_fragments": 301, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa rosea", "strain": "strain=DSM 235", "accession": "GCA_003634315.1", "taxid": 69360, "species_taxid": 69360, "relation_to_type": "type", "validated": true, "ani": 77.5896, "matched_fragments": 344, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 77.4984, "matched_fragments": 282, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 76.2235, "matched_fragments": 91, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 76.0397, "matched_fragments": 123, "total_fragments": 1680, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halofilum ochraceum", "strain": "strain=XJ16", "accession": "GCA_001614315.2", "taxid": 1611323, 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