{ "type": "genome", "identifier": "GCF_016656965.1", "organism": "Brevundimonas vitisensis", "title": "Brevundimonas vitisensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016656965.1", "bioproject": "PRJNA224116", "biosample": "SAMN17207124", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2800818", "species_taxid": "2800818", "organism_name": "Brevundimonas vitisensis", "infraspecific_name": "strain=GR-TSA-9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/18", "asm_name": "ASM1665696v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_016656965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/656/965/GCF_016656965.1_ASM1665696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2976716", "genome_size_ungapped": "2976716", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016656965.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3029", "protein_coding_gene_count": "2963", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-18", "dateModified": "2021-01-18", "datePublished": "2021-01-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas vitisensis" ], "sample_taxid": [ "2800818" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.817 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2976716", "Number of Sequences": "1", "Longest Sequences (bp)": "2976716", "N50 (bp)": "2976716", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "2992", "Average Protein Length": "304.5", "Coding Ratio (%)": "91.8", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, 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"cell_diameter": -0.348, "cell_length": 0.266, "doubling_h": null, "growth_tmp": 28.681, "optimum_tmp": 28.178, "optimum_ph": 7.406, "genome_size": 3161332.56, "gc_content": 67.057, "coding_genes": 3106.166, "rRNA16S_genes": 2.0, "tRNA_genes": 49.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.1, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.9, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevundimonas", "vitisensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }