{ "type": "genome", "identifier": "GCF_016722895.1", "organism": "Ramlibacter aurantiacus", "title": "Ramlibacter aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016722895.1", "bioproject": "PRJNA224116", "biosample": "SAMN17221998", "wgs_master": "JAEQNA000000000.1", "refseq_category": "reference genome", "taxid": "2801330", "species_taxid": "2801330", "organism_name": "Ramlibacter aurantiacus", "infraspecific_name": "strain=AW1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1672289v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_016722895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/722/895/GCF_016722895.1_ASM1672289v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5114016", "genome_size_ungapped": "5113621", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016722895.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "4870", "protein_coding_gene_count": "4762", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Ramlibacter aurantiacus" ], "sample_taxid": [ "2801330" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.388 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5114016", "Number of Sequences": "28", "Longest Sequences (bp)": "1681574", "N50 (bp)": "401638", "Gap Ratio (%)": "0.007724", "GCcontent (%)": "68.6", "Number of CDSs": "4818", "Average Protein Length": "325.2", "Coding Ratio (%)": "91.9", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ramlibacter rhizophilus", "strain": "strain=CCTCC AB2015357", "accession": "GCA_004681965.1", "taxid": 1781167, "species_taxid": 1781167, "relation_to_type": "type", "validated": true, "ani": 83.1052, "matched_fragments": 909, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 82.4526, "matched_fragments": 747, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 81.4466, "matched_fragments": 704, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 81.2595, "matched_fragments": 797, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter aquaticus", "strain": "strain=LMG 30558", "accession": "GCA_015159745.1", "taxid": 2780094, "species_taxid": 2780094, "relation_to_type": "type", "validated": true, "ani": 81.2313, "matched_fragments": 677, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter henchirensis", "strain": "strain=DSM 14656", "accession": "GCA_004682015.1", "taxid": 204072, "species_taxid": 204072, "relation_to_type": "type", "validated": true, "ani": 81.0382, "matched_fragments": 727, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter algicola", "strain": "strain=CrO1", "accession": "GCA_016641735.1", "taxid": 2795217, "species_taxid": 2795217, "relation_to_type": "type", "validated": true, "ani": 80.8123, "matched_fragments": 678, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter monticola", "strain": "strain=KACC 19175", "accession": "GCA_016722785.1", "taxid": 1926872, "species_taxid": 1926872, "relation_to_type": "type", "validated": true, "ani": 80.7078, "matched_fragments": 742, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter alkalitolerans", "strain": "strain=KACC 19305", "accession": "GCA_016722765.1", "taxid": 2039631, "species_taxid": 2039631, "relation_to_type": "type", "validated": true, "ani": 80.5964, "matched_fragments": 745, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 80.5449, "matched_fragments": 806, "total_fragments": 1691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter lithotrophicus", "strain": "strain=RBP-1", "accession": "GCA_012184415.1", 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