{ "type": "genome", "identifier": "GCF_016722925.1", "organism": "Rhizobium setariae", "title": "Rhizobium setariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016722925.1", "bioproject": "PRJNA224116", "biosample": "SAMN17224792", "wgs_master": "JAEQNC000000000.1", "refseq_category": "reference genome", "taxid": "2801340", "species_taxid": "2801340", "organism_name": "Rhizobium setariae", "infraspecific_name": "strain=KVB221", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/19", "asm_name": "ASM1672292v1", "asm_submitter": "Dongguk University", "gbrs_paired_asm": "GCA_016722925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/722/925/GCF_016722925.1_ASM1672292v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5611640", "genome_size_ungapped": "5611543", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016722925.1-RS_2024_05_07", "annotation_date": "2024-05-07", "total_gene_count": "5316", "protein_coding_gene_count": "5155", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-19", "dateModified": "2021-01-19", "datePublished": "2021-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium setariae" ], "sample_taxid": [ "2801340" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Busan" ], "sample_host_location_id": [], "data_size": "1.581 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5611640", "Number of Sequences": "37", "Longest Sequences (bp)": "571340", "N50 (bp)": "398554", "Gap Ratio (%)": "0.001729", "GCcontent (%)": "59.3", "Number of CDSs": "5343", "Average Protein Length": "309.6", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shinella curvata", "strain": "strain=C3", "accession": "GCA_022899935.1", "taxid": 1817964, "species_taxid": 1817964, "relation_to_type": "type", "validated": true, "ani": 78.8435, "matched_fragments": 572, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter selenitireducens", "strain": "strain=ATCC BAA-1503", "accession": "GCA_000518785.1", "taxid": 448181, "species_taxid": 448181, "relation_to_type": "type", "validated": true, "ani": 78.8235, "matched_fragments": 486, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 78.8109, "matched_fragments": 618, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 78.8034, "matched_fragments": 513, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 78.7911, "matched_fragments": 528, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.7908, "matched_fragments": 493, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 78.7541, "matched_fragments": 499, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium giardinii", "strain": "strain=H152", "accession": "GCA_000379605.1", "taxid": 56731, "species_taxid": 56731, "relation_to_type": "type", "validated": true, "ani": 78.6578, "matched_fragments": 533, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophoriradicis", "strain": "strain=CCBAU 03470", "accession": "GCA_003939025.1", "taxid": 1535245, "species_taxid": 1535245, "relation_to_type": "type", "validated": true, "ani": 78.6561, "matched_fragments": 470, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium vallis", "strain": "strain=CCBAU 65647", "accession": "GCA_003985155.1", "taxid": 634290, "species_taxid": 634290, "relation_to_type": "type", "validated": true, "ani": 78.6091, "matched_fragments": 505, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pisi", "strain": "strain=DSM 30132", "accession": "GCA_003938655.1", "taxid": 574561, "species_taxid": 574561, "relation_to_type": "type", "validated": true, "ani": 78.5554, "matched_fragments": 492, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium metallidurans", "strain": "strain=DSM 26575", "accession": "GCA_014196505.1", "taxid": 1265931, "species_taxid": 1265931, "relation_to_type": "type", "validated": true, "ani": 78.5312, "matched_fragments": 461, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wuzhouense", "strain": "strain=W44", "accession": "GCA_003205195.1", "taxid": 1986026, "species_taxid": 1986026, "relation_to_type": "type", "validated": true, "ani": 78.513, "matched_fragments": 428, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium phaseoli", "strain": "strain=ATCC 14482", "accession": "GCA_003985125.1", "taxid": 396, "species_taxid": 396, "relation_to_type": "type", "validated": true, "ani": 78.5054, "matched_fragments": 501, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium vignae", "strain": "strain=CCBAU 05176", "accession": "GCA_000732195.1", "taxid": 690585, "species_taxid": 690585, "relation_to_type": "type", "validated": true, "ani": 78.4507, "matched_fragments": 469, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium tropici", "strain": "strain=CIAT 899", "accession": "GCA_000330885.1", "taxid": 398, "species_taxid": 398, "relation_to_type": "type", "validated": true, "ani": 78.4266, "matched_fragments": 471, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=LMG150", "accession": "GCA_007002985.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 78.4113, "matched_fragments": 467, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium binae", "strain": "strain=BLR195", "accession": "GCA_019684455.1", "taxid": 1138190, "species_taxid": 1138190, "relation_to_type": "type", "validated": true, "ani": 78.3895, "matched_fragments": 480, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium rhizogenes", "strain": "strain=NBRC 13257", "accession": "GCA_000696095.1", "taxid": 359, "species_taxid": 359, "relation_to_type": "type", "validated": true, "ani": 78.3463, "matched_fragments": 477, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium binae", "strain": "strain=BLR195", "accession": "GCA_017357225.1", "taxid": 1138190, "species_taxid": 1138190, "relation_to_type": "type", "validated": true, "ani": 78.3328, "matched_fragments": 500, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium multihospitium", "strain": "strain=HAMBI 2975", "accession": "GCA_900094585.1", "taxid": 410764, "species_taxid": 410764, "relation_to_type": "type", "validated": true, "ani": 78.2895, "matched_fragments": 503, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium hainanense", "strain": "strain=CCBAU 57015", "accession": "GCA_900094555.1", "taxid": 52131, "species_taxid": 52131, "relation_to_type": "type", "validated": true, "ani": 78.2793, "matched_fragments": 479, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium glycinendophyticum", "strain": "strain=CL12", "accession": "GCA_006443685.1", "taxid": 2589807, "species_taxid": 2589807, "relation_to_type": "type", "validated": true, "ani": 78.2499, "matched_fragments": 391, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=ITTG R7", "accession": "GCA_013488225.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 78.2427, "matched_fragments": 468, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella daejeonensis", "strain": "strain=JCM 16236", "accession": "GCA_024281235.1", "taxid": 659017, "species_taxid": 659017, "relation_to_type": "type", "validated": true, "ani": 78.2266, "matched_fragments": 412, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium jaguaris", "strain": "strain=CCGE525", "accession": "GCA_003627755.1", "taxid": 1312183, "species_taxid": 1312183, "relation_to_type": "type", "validated": true, "ani": 78.2249, "matched_fragments": 473, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=NBRC 14782", "accession": "GCA_006539625.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 78.2039, "matched_fragments": 457, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer psoraleae", "strain": "strain=CCBAU 65732", "accession": "GCA_013283645.1", "taxid": 520838, "species_taxid": 520838, "relation_to_type": "type", "validated": true, "ani": 78.1981, "matched_fragments": 468, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium huautlense", "strain": "strain=DSM 21817", "accession": "GCA_002968575.1", "taxid": 67774, "species_taxid": 67774, "relation_to_type": "type", "validated": true, "ani": 78.1458, "matched_fragments": 348, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=DSM 18446", "accession": "GCA_017873105.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 78.1402, "matched_fragments": 472, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 78.1309, "matched_fragments": 410, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 78.1122, "matched_fragments": 402, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium altiplani", "strain": "strain=BR 10423", "accession": "GCA_001542405.1", "taxid": 1864509, "species_taxid": 1864509, "relation_to_type": "type", "validated": true, "ani": 78.0572, "matched_fragments": 411, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium mongolense subsp. loessense", "strain": "strain=CGMCC 1.3401", "accession": "GCA_900099775.1", "taxid": 158890, "species_taxid": 57676, "relation_to_type": "type", "validated": true, "ani": 77.9404, "matched_fragments": 421, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016722925.1", "gtdb_species": "s__FKL33 sp016722925", "ani": 100.0, "matched_fragments": 1846, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__FKL33", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014158035.1", "gtdb_species": "s__FKL33 sp014158035", "ani": 79.5866, "matched_fragments": 705, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__FKL33", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005222915.1", "gtdb_species": "s__FKL33 sp005222915", "ani": 79.5829, "matched_fragments": 722, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__FKL33", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203155.1", "gtdb_species": "s__Shinella fusca", "ani": 78.8034, "matched_fragments": 513, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900155885.1", "gtdb_species": "s__RU20A sp900155885", "ani": 78.6995, "matched_fragments": 439, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__RU20A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014195095.1", "gtdb_species": "s__Rhizobium sp014195095", "ani": 78.5824, "matched_fragments": 518, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001651875.1", "gtdb_species": "s__Sinorhizobium saheli", "ani": 78.5726, "matched_fragments": 495, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900466575.1", "gtdb_species": "s__Ensifer_A sp900466575", "ani": 78.5301, "matched_fragments": 413, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900215285.1", "gtdb_species": "s__Ensifer_A adhaerens_A", "ani": 78.5259, "matched_fragments": 405, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014193025.1", "gtdb_species": "s__Rhizobium sp014193025", "ani": 78.4655, "matched_fragments": 530, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902706285.1", "gtdb_species": "s__Rhizobium sp902706285", "ani": 78.4444, "matched_fragments": 476, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003627795.1", "gtdb_species": "s__Rhizobium sp003627795", "ani": 78.3786, "matched_fragments": 482, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001296045.1", "gtdb_species": "s__Allorhizobium sp001296045", "ani": 78.2679, "matched_fragments": 372, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Allorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002968845.1", "gtdb_species": "s__Neorhizobium tomejilense", "ani": 78.2436, "matched_fragments": 479, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.02", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_013283645.1", "gtdb_species": "s__Sinorhizobium psoraleae", "ani": 78.1801, "matched_fragments": 471, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Sinorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900469175.1", "gtdb_species": "s__Rhizobium sp900469175", "ani": 78.1473, "matched_fragments": 471, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.85", "num_clustered_genomes": 48, "status": "-" }, { "accession": "GCF_002968575.1", "gtdb_species": "s__Neorhizobium huautlense", "ani": 78.1384, "matched_fragments": 348, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002968635.1", "gtdb_species": "s__Neorhizobium alkalisoli", "ani": 78.079, "matched_fragments": 405, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.23, "cell_length": 0.207, "doubling_h": 0.225, "growth_tmp": 28.733, "optimum_tmp": 28.423, "optimum_ph": 6.983, "genome_size": 6239444.624, "gc_content": 60.147, "coding_genes": 6587.615, "rRNA16S_genes": 3.0, "tRNA_genes": 51.725, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.793, "range_salinity": null, "facultative_respiration": 0.05, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.95, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhizobium", "setariae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }