{
    "type": "genome",
    "identifier": "GCF_016724805.1",
    "organism": "Sutterella wadsworthensis",
    "title": "Sutterella wadsworthensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016724805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357328",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "40545",
        "species_taxid": "40545",
        "organism_name": "Sutterella wadsworthensis",
        "infraspecific_name": "strain=FDAARGOS_1159",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/20",
        "asm_name": "ASM1672480v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_016724805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/724/805/GCF_016724805.1_ASM1672480v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3026517",
        "genome_size_ungapped": "3026517",
        "gc_percent": "55.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016724805.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "2480",
        "protein_coding_gene_count": "2383",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-20",
    "dateModified": "2021-01-20",
    "datePublished": "2021-01-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sutterella wadsworthensis"
        ],
        "sample_taxid": [
            "40545"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.856 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3026517",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3026517",
        "N50 (bp)": "3026517",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.0",
        "Number of CDSs": "2416",
        "Average Protein Length": "355.4",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "15",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sutterella wadsworthensis",
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                "accession": "GCA_016724805.1",
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                "relation_to_type": "type",
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                "matched_fragments": 1008,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sutterella wadsworthensis",
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                "accession": "GCA_003315195.1",
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                "species_taxid": 40545,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 942,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sutterella faecalis",
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                "species_taxid": 2584944,
                "relation_to_type": "type",
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                "ani": 79.532,
                "matched_fragments": 296,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutterella megalosphaeroides",
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                "accession": "GCA_003609995.1",
                "taxid": 2494234,
                "species_taxid": 2494234,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1467,
                "matched_fragments": 161,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutterella parvirubra",
                "strain": "strain=YIT 11816",
                "accession": "GCA_000250875.1",
                "taxid": 437898,
                "species_taxid": 437898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3189,
                "matched_fragments": 141,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duodenibacillus massiliensis",
                "strain": "strain=Marseille-P2968",
                "accession": "GCA_900128485.1",
                "taxid": 1852381,
                "species_taxid": 1852381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1395,
                "matched_fragments": 91,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003315195.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "97.53",
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                "num_clustered_genomes": 35,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905198475.1",
                "gtdb_species": "s__Sutterella sp905198475",
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                "matched_fragments": 257,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006337085.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_009183815.1",
                "gtdb_species": "s__Sutterella seckii_A",
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                "matched_fragments": 277,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
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                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
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                "matched_fragments": 176,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016899755.1",
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                "matched_fragments": 193,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
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                "mean_intra_species_ani": "98.18",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
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            },
            {
                "accession": "GCA_900770335.1",
                "gtdb_species": "s__Sutterella sp900770335",
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                "matched_fragments": 193,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_900764215.1",
                "gtdb_species": "s__Sutterella sp900764215",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella",
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                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.155,
        "cell_length": 0.079,
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        "growth_tmp": 37.0,
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        "optimum_ph": null,
        "genome_size": 2809530.25,
        "gc_content": 58.295,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Sutterella",
        "wadsworthensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}