# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence1:1..1981(+)	partial			WP_000489923.1	alpha-like surface protein	100.0	47.0	43.5
MGA_15	LOCUS_00150	sequence1:12590..12874(+)	partial			WP_010906104.1	histidine phosphatase family protein	89.4	44.4	56.0
MGA_25	LOCUS_00250	sequence1:21521..21811(+)	frameshift		21796	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_26	LOCUS_00260	sequence1:21847..22626(+)	frameshift		21802	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.3
MGA_30	LOCUS_00300	sequence1:24134..24913(-)	frameshift		24957	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.7
MGA_31	LOCUS_00310	sequence1:24949..25239(-)	frameshift		24963	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_33	LOCUS_00330	sequence1:25682..27964(+)	partial			WP_001247520.1	GBS Bsp-like repeat-containing protein	22.6	19.9	49.1
MGA_34	LOCUS_00340	sequence1:28134..32189(+)	partial			WP_196792563.1	LPXTG cell wall anchor domain-containing protein	27.8	44.4	68.9
MGA_55	LOCUS_00550	sequence1:50906..51106(+)	internal_stop_codon	51104..51106(+)		WP_205010637.1	IS30 family transposase	90.9	19.2	55.7
MGA_65	LOCUS_00650	sequence1:59806..61422(+)	partial			WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	94.2	62.7	94.1
MGA_66	LOCUS_00660	sequence1:61370..62167(-)	frameshift		62265	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_68	LOCUS_00680	sequence1:62827..63669(+)	partial			WP_010922513.1	CRISPR-associated helicase/endonuclease Cas3	99.3	34.7	93.2
MGA_72	LOCUS_00720	sequence1:67278..67580(+)	internal_stop_codon	67578..67580(+)		WP_003060901.1	CRISPR-associated protein Cas4	100.0	44.6	95.0
MGA_73	LOCUS_00730	sequence1:67581..67949(+)	internal_stop_codon	67578..67580(+)		WP_003060901.1	CRISPR-associated protein Cas4	97.5	53.1	78.2
MGA_89	LOCUS_00890	sequence1:81715..82029(+)	frameshift		81984	WP_026217689.1	GNAT family N-acetyltransferase	85.6	62.2	70.8
MGA_104	LOCUS_01040	sequence1:97031..97450(+)	frameshift		97444	WP_002261950.1	SDR family oxidoreductase	95.7	48.0	57.9
MGA_105	LOCUS_01050	sequence1:97465..97872(+)	frameshift		97444	WP_002261950.1	SDR family oxidoreductase	94.8	46.2	55.5
MGA_117	LOCUS_01170	sequence1:110987..112633(+)	partial			WP_012027720.1	transglutaminase domain-containing protein	59.5	31.2	29.6
MGA_135	LOCUS_01350	sequence1:131523..131855(+)	frameshift		131849	WP_002263564.1	ferrous iron transport protein A	97.3	67.7	52.3
MGA_168	LOCUS_01680	sequence1:166735..166872(+)	frameshift		166866	WP_000582850.1	ATP-binding cassette domain-containing protein	97.8	18.0	84.1
MGA_169	LOCUS_01690	sequence1:166875..167468(+)	frameshift		166866	WP_000582850.1	ATP-binding cassette domain-containing protein	100.0	80.7	75.6
MGA_174	LOCUS_01740	sequence1:172792..172953(+)	internal_stop_codon	172765..172767(+)		WP_010922439.1	potassium transporter Kup	100.0	8.0	100.0
MGA_182	LOCUS_01820	sequence1:180152..180544(+)	internal_stop_codon	180542..180544(+)		WP_010922432.1	hypothetical protein	44.6	70.7	75.9
MGA_189	LOCUS_01890	sequence1:186755..186970(+)	internal_stop_codon	186743..186745(+)		WP_027970603.1	transposase	100.0	73.2	63.4
MGA_190	LOCUS_01900	sequence1:187003..187824(+)	frameshift,internal_stop_codon	186743..186745(+)	186928	WP_100190746.1	IS3 family transposase	97.4	69.6	62.4
MGA_239	LOCUS_02390	sequence1:245185..245982(-)	frameshift		246080	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_245	LOCUS_02450	sequence1:252202..252771(+)	partial			WP_088197863.1	IS3-like element ISSag2 family transposase	60.3	31.2	80.9
MGA_254	LOCUS_02540	sequence1:260445..261362(-)	partial			WP_002682345.1	CorA family divalent cation transporter	60.7	60.3	37.0
MGA_258	LOCUS_02580	sequence1:264731..265108(+)	partial			WP_076996129.1	IS1182 family transposase	62.4	16.2	76.9
MGA_259	LOCUS_02590	sequence1:265308..265925(-)	frameshift,internal_stop_codon	266186..266188(-)	266077	WP_088197835.1	IS3-like element ISSag5 family transposase	97.6	52.5	92.5
MGA_260	LOCUS_02600	sequence1:266186..266356(-)	frameshift,internal_stop_codon	266186..266188(-)	266074	WP_165992825.1	IS3 family transposase	73.2	10.8	100.0
MGA_272	LOCUS_02720	sequence1:279030..279827(+)	frameshift		278931	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_273	LOCUS_02730	sequence1:279895..280284(+)	internal_stop_codon	280282..280284(+)		WP_010922389.1	glycoside hydrolase family 13 protein	100.0	22.8	96.1
MGA_274	LOCUS_02740	sequence1:280366..281598(+)	internal_stop_codon	280282..280284(+)		WP_010922389.1	glycoside hydrolase family 13 protein	100.0	72.3	91.5
MGA_303	LOCUS_03030	sequence1:310449..311036(+)	internal_stop_codon	311034..311036(+)		WP_002904720.1	ZIP family manganese transporter TmpA	100.0	71.5	70.1
MGA_304	LOCUS_03040	sequence1:311043..311270(+)	internal_stop_codon	311034..311036(+)		WP_012775202.1	ZIP family metal transporter	100.0	27.4	74.7
MGA_317	LOCUS_03170	sequence1:322064..323035(+)	partial			WP_105158881.1	replication initiator protein A	64.7	70.6	31.8
MGA_318	LOCUS_03180	sequence1:323047..323373(+)	partial			WP_010905962.1	single-stranded DNA-binding protein	95.4	73.8	52.9
MGA_319	LOCUS_03190	sequence1:323411..325756(+)	partial			WP_001247520.1	GBS Bsp-like repeat-containing protein	22.0	19.9	49.1
MGA_322	LOCUS_03220	sequence1:327190..331473(+)	partial			WP_196792563.1	LPXTG cell wall anchor domain-containing protein	29.2	49.9	63.8
MGA_383	LOCUS_03830	sequence1:394117..394275(+)	frameshift,internal_stop_codon	394273..394275(+)	394452	WP_010922263.1	sugar O-acetyltransferase	98.1	27.1	80.4
MGA_384	LOCUS_03840	sequence1:394973..395230(-)	partial			WP_041272757.1	thioredoxin family protein	85.9	62.4	54.8
MGA_385	LOCUS_03850	sequence1:395240..395806(-)	frameshift,internal_stop_codon	395982..395984(-)	395801	WP_011462034.1	permease	97.3	54.8	50.8
MGA_386	LOCUS_03860	sequence1:395982..396236(-)	frameshift,internal_stop_codon	395982..395984(-)	395801	WP_011462034.1	permease	96.4	24.6	56.1
MGA_390	LOCUS_03900	sequence1:399005..399187(+)	internal_stop_codon	399185..399187(+)		WP_011100993.1	Cof-type HAD-IIB family hydrolase	96.7	22.1	55.2
MGA_392	LOCUS_03920	sequence1:399526..399804(+)	frameshift		399448	WP_010989455.1	Cof-type HAD-IIB family hydrolase	94.6	32.2	55.2
MGA_395	LOCUS_03950	sequence1:401861..402016(-)	frameshift,internal_stop_codon	402023..402025(-)	401890	WP_003566048.1	pyruvate oxidase	80.4	7.0	61.0
MGA_412	LOCUS_04120	sequence1:417670..418467(+)	frameshift		417571	WP_120719018.1	IS3 family transposase	99.2	58.6	71.9
MGA_439	LOCUS_04390	sequence1:449286..449414(+)	internal_stop_codon	449412..449414(+)		WP_205008888.1	hypothetical protein	100.0	43.8	85.7
MGA_441	LOCUS_04410	sequence1:450107..450931(+)	frameshift		450041	WP_096040522.1	IS3 family transposase	97.1	69.6	63.5
MGA_449	LOCUS_04490	sequence1:458618..458815(+)	partial			WP_002984476.1	CsbD family protein	70.8	69.7	89.1
MGA_496	LOCUS_04960	sequence1:507383..508174(+)	frameshift		507284	WP_120719018.1	IS3 family transposase	95.8	56.1	71.4
MGA_497	LOCUS_04970	sequence1:508183..508962(-)	frameshift		509006	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.3
MGA_498	LOCUS_04980	sequence1:508998..509288(-)	frameshift		509006	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_503	LOCUS_05030	sequence1:514526..514732(+)	frameshift,internal_stop_codon	514815..514817(+),514722..514724(+)	514627	WP_010922339.1	pyridoxamine kinase	50.0	11.8	73.5
MGA_504	LOCUS_05040	sequence1:514821..515060(+)	frameshift,internal_stop_codon	514815..514817(+),515104..515106(+),514722..514724(+)	515289,514627,515051	WP_010922339.1	pyridoxamine kinase	97.5	26.7	55.8
MGA_518	LOCUS_05180	sequence1:526192..526779(+)	frameshift		526753,526117	WP_100190746.1	IS3 family transposase	94.9	48.4	63.8
MGA_519	LOCUS_05190	sequence1:526802..527014(+)	frameshift		526755	WP_143249001.1	IS3 family transposase	94.3	48.2	84.8
MGA_520	LOCUS_05200	sequence1:527047..527427(+)	frameshift		527412	WP_010922317.1	D-lactate dehydrogenase	41.3	15.8	92.3
MGA_547	LOCUS_05470	sequence1:552472..553056(+)	frameshift		552392	WP_000620981.1	sensor histidine kinase	97.4	60.6	56.1
MGA_554	LOCUS_05540	sequence1:559519..559812(-)	partial			WP_012775307.1	NusG domain II-containing protein	99.0	66.2	66.7
MGA_557	LOCUS_05570	sequence1:563022..563444(-)	partial			WP_004398494.1	cupin domain-containing protein	91.4	68.8	60.2
MGA_564	LOCUS_05640	sequence1:569391..570161(-)	partial			WP_001305829.1	ferredoxin reductase family protein	83.6	49.4	25.0
MGA_572	LOCUS_05720	sequence1:578351..578566(-)	frameshift		578612	WP_143249001.1	IS3 family transposase	95.8	49.6	80.9
MGA_573	LOCUS_05730	sequence1:578589..579176(-)	frameshift		579250,578614	WP_100190746.1	IS3 family transposase	93.8	47.9	61.7
MGA_577	LOCUS_05770	sequence1:581339..582118(-)	frameshift		582162	WP_088197863.1	IS3-like element ISSag2 family transposase	99.2	69.8	94.2
MGA_578	LOCUS_05780	sequence1:582154..582444(-)	frameshift		582162	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	92.6
MGA_579	LOCUS_05790	sequence1:582690..583124(-)	frameshift,internal_stop_codon	582690..582692(-)	583098	WP_002987954.1	metal ABC transporter substrate-binding lipoprotein/laminin-binding adhesin Lmb	95.8	45.4	56.8
MGA_580	LOCUS_05800	sequence1:583090..583305(-)	frameshift		583098	WP_000755138.1	metal ABC transporter substrate-binding lipoprotein/laminin-binding adhesin Lmb	84.5	19.6	75.0
MGA_582	LOCUS_05820	sequence1:584893..585351(-)	partial			WP_000672596.1	pneumococcal histidine triad protein PhtE	94.1	13.4	44.4
MGA_623	LOCUS_06230	sequence1:624435..625133(+)	internal_stop_codon	624321..624323(+)		WP_001086430.1	AraC family transcriptional regulator	98.3	73.8	67.1
MGA_625	LOCUS_06250	sequence1:626891..627034(-)	frameshift		627128,627116	WP_010922289.1	NADP-dependent malic enzyme	100.0	12.1	68.1
MGA_626	LOCUS_06260	sequence1:627114..627356(-)	frameshift,internal_stop_codon	627384..627386(-)	627128,627122	WP_010922289.1	NADP-dependent malic enzyme	93.8	19.1	89.3
MGA_627	LOCUS_06270	sequence1:627384..627893(-)	frameshift,internal_stop_codon	627384..627386(-)	627128,627122	WP_010922289.1	NADP-dependent malic enzyme	71.6	34.3	81.2
MGA_628	LOCUS_06280	sequence1:628321..628731(+)	frameshift,internal_stop_codon	628318..628320(+),628747..628749(+),628729..628731(+),628048..628050(+)	628773	WP_116878224.1	IS982 family transposase	98.5	50.8	76.1
MGA_656	LOCUS_06560	sequence1:653719..653865(+)	partial			WP_003812004.1	P-II family nitrogen regulator	100.0	42.9	56.2
MGA_661	LOCUS_06610	sequence1:658034..658324(+)	frameshift		657908	WP_000057440.1	IS200/IS605 family transposase	100.0	62.3	97.9
MGA_662	LOCUS_06620	sequence1:658477..658758(-)	frameshift		658747	WP_005812397.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	92.5	22.7	61.6
MGA_663	LOCUS_06630	sequence1:658736..659293(-)	frameshift,internal_stop_codon	659375..659377(-)	658747	WP_005812397.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	98.9	47.5	52.5
MGA_664	LOCUS_06640	sequence1:659375..659596(-)	internal_stop_codon	659375..659377(-)		WP_011475538.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	94.5	18.4	62.3
MGA_668	LOCUS_06680	sequence1:662763..665846(-)	partial			WP_011023138.1	ATP-dependent DNA helicase	42.5	55.5	24.0
MGA_679	LOCUS_06790	sequence1:671520..672329(-)	partial			WP_001071181.1	SNF2-related protein	99.6	11.8	82.8
MGA_697	LOCUS_06970	sequence1:698673..699083(-)	partial			WP_000821307.1	CPBP family intramembrane metalloprotease	99.3	69.2	41.5
MGA_705	LOCUS_07050	sequence1:704501..705298(+)	internal_stop_codon	704411..704413(+)		WP_205010637.1	IS30 family transposase	98.1	82.0	67.7
MGA_744	LOCUS_07440	sequence1:747207..747422(-)	frameshift,internal_stop_codon	747207..747209(-),746955..746957(-),747206..747208(-),746954..746956(-)	747421	WP_001043090.1	LPXTG cell wall anchor domain-containing protein	59.2	8.2	59.5
MGA_745	LOCUS_07450	sequence1:747419..747706(-)	frameshift,internal_stop_codon	747206..747208(-)	747424	WP_001043090.1	LPXTG cell wall anchor domain-containing protein	98.9	18.4	50.0
MGA_749	LOCUS_07490	sequence1:750837..751148(-)	frameshift,internal_stop_codon	750852..750854(-)	750902	WP_002287776.1	VTT domain-containing protein	77.7	39.9	41.2
MGA_765	LOCUS_07650	sequence1:766759..767097(+)	partial			WP_003596308.1	IS30 family transposase	83.0	28.4	52.1
MGA_767	LOCUS_07670	sequence1:768392..769048(-)	frameshift,internal_stop_codon	768391..768393(-)	769083	WP_102777394.1	IS3 family transposase	100.0	57.7	93.1
MGA_770	LOCUS_07700	sequence1:770023..770820(-)	frameshift		770918	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_772	LOCUS_07720	sequence1:771396..772262(+)	partial			WP_209421102.1	IS3 family transposase	95.1	59.3	53.5
MGA_774	LOCUS_07740	sequence1:774047..774337(+)	frameshift		774328,774445	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	93.6
MGA_775	LOCUS_07750	sequence1:774518..775153(+)	frameshift		774328,774445	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.2
MGA_779	LOCUS_07790	sequence1:778518..779180(+)	internal_stop_codon	779178..779180(+)		WP_002990257.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	100.0	52.1	74.5
MGA_780	LOCUS_07800	sequence1:779184..779786(+)	internal_stop_codon	779178..779180(+)		WP_002990257.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	98.5	46.7	84.3
MGA_814	LOCUS_08140	sequence1:814405..814581(-)	partial			WP_000048058.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_816	LOCUS_08160	sequence1:815552..815917(-)	frameshift		815987	WP_002261967.1	aminotransferase	97.5	31.2	54.2
MGA_817	LOCUS_08170	sequence1:815958..816656(-)	frameshift		815990	WP_002261967.1	aminotransferase	96.1	60.3	65.4
MGA_826	LOCUS_08260	sequence1:828140..828937(+)	frameshift		828041	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_850	LOCUS_08500	sequence1:855246..856043(+)	frameshift		855147	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_853	LOCUS_08530	sequence1:860443..860769(-)	frameshift,internal_stop_codon	860443..860445(-),860425..860427(-)	860400	WP_116878224.1	IS982 family transposase	98.1	40.2	77.4
MGA_862	LOCUS_08620	sequence1:871171..871350(-)	partial			WP_000965642.1	hypothetical protein	71.2	71.2	76.2
MGA_873	LOCUS_08730	sequence1:879081..880454(-)	partial			WP_011014533.1	hypothetical protein	42.0	21.7	30.7
MGA_918	LOCUS_09180	sequence1:911527..911886(+)	partial			WP_010905968.1	helix-turn-helix domain-containing protein	73.1	50.3	43.7
MGA_927	LOCUS_09270	sequence1:918341..918958(+)	internal_stop_codon	918302..918304(+)		WP_011837122.1	glutathione-dependent disulfide-bond oxidoreductase	99.5	77.9	63.2
MGA_932	LOCUS_09320	sequence1:922112..922513(-)	frameshift		922544	WP_010922098.1	GntR family transcriptional regulator	100.0	55.4	89.5
MGA_933	LOCUS_09330	sequence1:922524..922835(-)	frameshift		922544	WP_010922098.1	GntR family transcriptional regulator	94.2	40.4	90.7
MGA_939	LOCUS_09390	sequence1:929143..929556(-)	internal_stop_codon	929614..929616(-)		WP_002263720.1	DUF1003 domain-containing protein	90.5	49.2	69.4
MGA_952	LOCUS_09520	sequence1:944440..946098(-)	partial			WP_003549917.1	type I pullulanase	84.6	37.8	43.6
MGA_953	LOCUS_09530	sequence1:946376..947494(-)	partial			WP_002273870.1	type I pullulanase	62.1	28.0	29.1
MGA_954	LOCUS_09540	sequence1:947731..948267(+)	frameshift,internal_stop_codon	948544..948546(+)	948273,948210	WP_000163483.1	metallophosphoesterase	90.4	55.9	53.4
MGA_955	LOCUS_09550	sequence1:948308..948544(+)	frameshift,internal_stop_codon	948544..948546(+)	948273,948213	WP_011836763.1	metallophosphoesterase	100.0	27.3	46.2
MGA_1011	LOCUS_10110	sequence1:1006848..1007900(-)	frameshift		1007901	WP_000833273.1	ATP-binding protein	98.3	77.7	75.6
MGA_1014	LOCUS_10140	sequence1:1009629..1009784(+)	partial			WP_002985576.1	SPJ_0845 family protein	70.6	70.6	80.6
MGA_1020	LOCUS_10200	sequence1:1015189..1017075(-)	internal_stop_codon	1017079..1017081(-)		WP_001093389.1	S8 family serine peptidase	97.6	38.6	54.3
MGA_1021	LOCUS_10210	sequence1:1017079..1019574(-)	frameshift,internal_stop_codon	1017079..1017081(-)	1019578	WP_001093389.1	S8 family serine peptidase	99.0	52.5	72.2
MGA_1022	LOCUS_10220	sequence1:1019576..1019860(-)	frameshift		1019578	WP_001093389.1	S8 family serine peptidase	97.9	6.4	39.6
MGA_1032	LOCUS_10320	sequence1:1030870..1031235(-)	internal_stop_codon	1030870..1030872(-)		WP_102777394.1	IS3 family transposase	100.0	31.9	91.7
MGA_1055	LOCUS_10550	sequence1:1054099..1055283(+)	partial			WP_010922721.1	streptodornase B	61.9	73.8	38.5
MGA_1059	LOCUS_10590	sequence1:1059753..1059989(-)	partial			WP_002985700.1	preprotein translocase subunit SecG	74.4	74.4	87.9
MGA_1060	LOCUS_10600	sequence1:1060178..1060741(-)	frameshift		1060782	WP_010921978.1	multidrug efflux MFS transporter	100.0	47.1	89.3
MGA_1061	LOCUS_10610	sequence1:1060765..1061289(-)	frameshift		1060782	WP_010921978.1	multidrug efflux MFS transporter	99.4	43.6	66.5
MGA_1071	LOCUS_10710	sequence1:1070676..1071236(-)	partial			WP_010921973.1	hypothetical protein	81.7	45.9	80.3
MGA_1072	LOCUS_10720	sequence1:1071311..1071601(+)	frameshift		1071586	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1073	LOCUS_10730	sequence1:1071637..1072416(+)	frameshift		1071592	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	92.7
MGA_1086	LOCUS_10860	sequence1:1082777..1083952(-)	partial			WP_010921965.1	LysM domain-containing protein	36.3	36.5	85.9
MGA_1098	LOCUS_10980	sequence1:1093029..1093724(-)	partial			WP_002988478.1	streptococcal pyrogenic exotoxin SpeC	67.5	67.7	31.9
MGA_1103	LOCUS_11030	sequence1:1096848..1097450(-)	partial			WP_000227060.1	hypothetical protein	53.5	67.7	42.6
MGA_1109	LOCUS_11090	sequence1:1099918..1101774(-)	partial			WP_000536253.1	DUF859 family phage minor structural protein	73.8	68.7	37.2
MGA_1110	LOCUS_11100	sequence1:1101779..1105228(-)	partial			WP_000955548.1	glucosaminidase domain-containing protein	83.8	72.0	43.9
MGA_1124	LOCUS_11240	sequence1:1113749..1114657(-)	partial			WP_014207062.1	minor capsid protein	28.8	22.8	36.8
MGA_1166	LOCUS_11660	sequence1:1137450..1138073(-)	partial			WP_209421102.1	IS3 family transposase	94.2	41.9	56.4
MGA_1178	LOCUS_11780	sequence1:1146372..1146914(-)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	38.9	49.6	71.4
MGA_1181	LOCUS_11810	sequence1:1147458..1148114(+)	frameshift		1147449,1147486	WP_010922759.1	Bro-N domain-containing protein	88.5	78.4	65.0
MGA_1190	LOCUS_11900	sequence1:1151715..1153232(+)	partial			WP_010714140.1	DNA primase family protein	86.1	53.5	37.1
MGA_1196	LOCUS_11960	sequence1:1156989..1157255(+)	internal_stop_codon	1156815..1156817(+)		WP_041828132.1	IS256-like element IS1191 family transposase	100.0	22.5	73.9
MGA_1199	LOCUS_11990	sequence1:1158265..1159089(+)	frameshift		1158199	WP_096040522.1	IS3 family transposase	97.1	69.6	62.8
MGA_1200	LOCUS_12000	sequence1:1159131..1159532(+)	partial			WP_102777394.1	IS3 family transposase	100.0	35.4	79.7
MGA_1208	LOCUS_12080	sequence1:1169628..1169924(-)	frameshift		1169665,1169998	WP_100190746.1	IS3 family transposase	84.7	21.7	61.4
MGA_1297	LOCUS_12970	sequence1:1255945..1256661(-)	internal_stop_codon	1256824..1256826(-)		WP_000009961.1	biotin synthase BioB	97.5	70.3	53.0
MGA_1299	LOCUS_12990	sequence1:1257359..1257904(-)	internal_stop_codon	1258160..1258162(-),1257974..1257976(-),1258067..1258069(-)		WP_012775196.1	pneumococcal-type histidine triad protein	81.8	17.1	32.9
MGA_1301	LOCUS_13010	sequence1:1258766..1259134(-)	frameshift,internal_stop_codon	1258748..1258750(-),1258766..1258768(-),1258715..1258717(-)	1259139	WP_012775274.1	pneumococcal-type histidine triad protein	45.9	6.2	50.0
MGA_1312	LOCUS_13120	sequence1:1267077..1267499(+)	frameshift,internal_stop_codon	1267603..1267605(+)	1267761	WP_001153836.1	IS30 family transposase	99.3	41.5	64.0
MGA_1321	LOCUS_13200	sequence1:1282224..1282577(-)	internal_stop_codon	1282635..1282637(-)		WP_077244862.1	IS481 family transposase	84.6	32.2	37.6
MGA_1334	LOCUS_13330	sequence1:1297538..1297843(-)	internal_stop_codon	1297931..1297933(-)		WP_205010637.1	IS30 family transposase	95.0	30.3	74.0
MGA_1335	LOCUS_13340	sequence1:1297931..1298170(-)	internal_stop_codon	1298264..1298266(-),1298423..1298425(-),1297931..1297933(-)		WP_205010637.1	IS30 family transposase	98.7	24.6	62.8
MGA_1341	LOCUS_13400	sequence1:1304606..1305208(-)	partial			WP_000564846.1	ISAs1-like element IS1548 family transposase	93.0	49.3	98.4
MGA_1345	LOCUS_13440	sequence1:1307877..1308095(-)	frameshift		1308141	WP_000607067.1	antiholin-like protein LrgB	98.6	30.5	53.5
MGA_1346	LOCUS_13450	sequence1:1308052..1308585(-)	frameshift		1308141	WP_001831408.1	antiholin-like protein LrgB	81.4	61.8	59.0
MGA_1347	LOCUS_13460	sequence1:1308603..1309052(-)	partial			WP_002469559.1	antiholin-like murein hydrolase modulator LrgA	74.5	74.5	57.7
MGA_1353	LOCUS_13520	sequence1:1315916..1317289(-)	partial			WP_003234692.1	alpha-amylase	87.7	60.8	54.1
MGA_1354	LOCUS_13530	sequence1:1317724..1318419(-)	internal_stop_codon	1317724..1317726(-),1318675..1318677(-),1317592..1317594(-),1318447..1318449(-)		WP_003234692.1	alpha-amylase	96.5	37.5	49.0
MGA_1355	LOCUS_13540	sequence1:1318447..1318671(-)	frameshift,internal_stop_codon	1318446..1318448(-),1318674..1318676(-)	1318712	WP_003234692.1	alpha-amylase	98.6	11.1	57.5
MGA_1380	LOCUS_13780	sequence1:1348094..1348660(-)	partial			WP_001080846.1	helix-turn-helix transcriptional regulator	38.8	51.8	53.4
MGA_1389	LOCUS_13870	sequence1:1352618..1352932(+)	internal_stop_codon	1352930..1352932(+)		WP_010922769.1	hypothetical protein	100.0	64.2	81.7
MGA_1390	LOCUS_13880	sequence1:1352954..1353106(+)	internal_stop_codon	1352930..1352932(+)		WP_010922769.1	hypothetical protein	100.0	30.9	80.0
MGA_1399	LOCUS_13970	sequence1:1359503..1359697(+)	frameshift		1359640	WP_011837674.1	sigma factor-like helix-turn-helix DNA-binding protein	76.6	32.9	73.5
MGA_1400	LOCUS_13980	sequence1:1359712..1359951(+)	frameshift		1359640	WP_011837674.1	sigma factor-like helix-turn-helix DNA-binding protein	100.0	53.0	63.3
MGA_1412	LOCUS_14100	sequence1:1367059..1367856(+)	frameshift		1366960	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1429	LOCUS_14270	sequence1:1383962..1384498(+)	partial			WP_000350703.1	cyclic nucleotide-binding domain-containing protein	87.6	73.4	53.5
MGA_1449	LOCUS_14470	sequence1:1412342..1413694(-)	partial			WP_001043090.1	LPXTG cell wall anchor domain-containing protein	62.4	56.4	36.2
MGA_1450	LOCUS_14480	sequence1:1414069..1415385(-)	partial			WP_010922714.1	M protein	73.5	65.7	31.1
MGA_1468	LOCUS_14660	sequence1:1435174..1435809(-)	frameshift		1435881,1435998	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.2
MGA_1469	LOCUS_14670	sequence1:1435990..1436280(-)	frameshift		1435881,1435998	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	93.6
MGA_1470	LOCUS_14680	sequence1:1436695..1437366(+)	partial			WP_003138385.1	IS256-like element IS905 family transposase	100.0	57.0	71.3
MGA_1477	LOCUS_14750	sequence1:1442888..1443178(+)	frameshift		1443163	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	26.1	85.4
MGA_1478	LOCUS_14760	sequence1:1443214..1443876(+)	frameshift		1443169	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	64.1
MGA_1479	LOCUS_14770	sequence1:1443962..1444150(+)	partial			WP_000985093.1	bacteriocin immunity protein	82.3	51.0	52.9
MGA_1513	LOCUS_15110	sequence1:1484769..1485464(+)	partial			WP_011022612.1	CPBP family intramembrane metalloprotease	79.2	73.0	26.3
MGA_1530	LOCUS_15280	sequence1:1499777..1500214(-)	internal_stop_codon	1499777..1499779(-)		WP_010921804.1	hypothetical protein	54.5	77.5	72.2
MGA_1551	LOCUS_15490	sequence1:1522551..1523324(+)	frameshift,internal_stop_codon	1522533..1522535(+)	1523276	WP_000100665.1	polyprenyl synthetase family protein	95.3	75.2	69.4
MGA_1552	LOCUS_15500	sequence1:1523565..1523747(-)	frameshift		1523761	WP_000472825.1	thiol reductant ABC exporter subunit CydC	96.7	10.0	67.2
MGA_1553	LOCUS_15510	sequence1:1523756..1524751(-)	frameshift,internal_stop_codon	1524755..1524757(-)	1523761,1524845	WP_000472825.1	thiol reductant ABC exporter subunit CydC	99.4	56.5	65.7
MGA_1554	LOCUS_15520	sequence1:1524741..1525310(-)	frameshift,internal_stop_codon	1524755..1524757(-)	1525586,1524851	WP_000472825.1	thiol reductant ABC exporter subunit CydC	85.7	27.8	75.9
MGA_1555	LOCUS_15530	sequence1:1525310..1525558(-)	frameshift		1525580	WP_000884540.1	thiol reductant ABC exporter subunit CydD	98.8	14.2	74.1
MGA_1556	LOCUS_15540	sequence1:1525572..1526429(-)	frameshift		1525583	WP_000884540.1	thiol reductant ABC exporter subunit CydD	99.3	49.5	67.5
MGA_1557	LOCUS_15550	sequence1:1526416..1526862(-)	internal_stop_codon	1526908..1526910(-)		WP_001275291.1	cytochrome d ubiquinol oxidase subunit II	98.0	42.8	60.7
MGA_1558	LOCUS_15560	sequence1:1526908..1527258(-)	internal_stop_codon	1526908..1526910(-)		WP_001275291.1	cytochrome d ubiquinol oxidase subunit II	83.6	28.6	87.6
MGA_1559	LOCUS_15570	sequence1:1527259..1527972(-)	frameshift		1528058,1528155	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	100.0	49.9	75.9
MGA_1560	LOCUS_15580	sequence1:1528141..1528386(-)	frameshift,internal_stop_codon	1528446..1528448(-)	1528060,1528157,1528415	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	98.8	16.8	80.0
MGA_1561	LOCUS_15590	sequence1:1528446..1528685(-)	frameshift,internal_stop_codon	1528446..1528448(-)	1528415	WP_000151499.1	cytochrome ubiquinol oxidase subunit I	100.0	16.6	87.3
MGA_1562	LOCUS_15600	sequence1:1529013..1529174(-)	internal_stop_codon	1529202..1529204(-),1529013..1529015(-)		WP_000659003.1	NAD(P)/FAD-dependent oxidoreductase	100.0	13.2	77.4
MGA_1563	LOCUS_15610	sequence1:1529202..1529918(-)	internal_stop_codon	1529202..1529204(-),1529940..1529942(-),1529013..1529015(-)		WP_000659003.1	NAD(P)/FAD-dependent oxidoreductase	100.0	59.2	68.9
MGA_1619	LOCUS_16160	sequence1:1584997..1585806(+)	frameshift		1584968	WP_150880979.1	ISL3 family transposase	99.6	65.7	76.5
MGA_1625	LOCUS_16220	sequence1:1591100..1591390(+)	frameshift		1591381	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_1626	LOCUS_16230	sequence1:1591570..1592205(+)	frameshift		1591381	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	97.6
MGA_1630	LOCUS_16250	sequence1:1607040..1607180(-)	partial			WP_010921860.1	hypothetical protein	60.9	82.4	100.0
MGA_1655	LOCUS_16500	sequence1:1635254..1636078(-)	frameshift		1636143	WP_096040522.1	IS3 family transposase	97.1	69.6	64.7
MGA_1657	LOCUS_16520	sequence1:1636607..1636918(+)	frameshift		1636909	WP_102777394.1	IS3 family transposase	98.1	27.7	66.3
MGA_1658	LOCUS_16530	sequence1:1636915..1637430(+)	frameshift		1636909	WP_102777394.1	IS3 family transposase	100.0	45.5	78.9
MGA_1670	LOCUS_16650	sequence1:1648932..1649459(+)	partial			WP_001042655.1	transglycosylase SLT domain-containing protein	54.9	41.0	77.1
MGA_1671	LOCUS_16660	sequence1:1649728..1650021(-)	internal_stop_codon	1649728..1649730(-)		WP_011837716.1	HAD family hydrolase	100.0	44.7	42.3
MGA_1704	LOCUS_16990	sequence1:1687738..1687956(+)	frameshift,internal_stop_codon	1687954..1687956(+),1688051..1688053(+),1687957..1687959(+)	1688152,1688168,1687983	WP_054278179.1	site-specific integrase	88.9	16.8	48.4
MGA_1748	LOCUS_17430	sequence1:1737127..1737633(-)	internal_stop_codon	1737127..1737129(-),1737712..1737714(-)		WP_076996129.1	IS1182 family transposase	99.4	34.8	71.9
MGA_1749	LOCUS_17440	sequence1:1737712..1738425(-)	internal_stop_codon	1737712..1737714(-)		WP_184006649.1	IS1182 family transposase	100.0	49.4	77.2
MGA_1753	LOCUS_17480	sequence1:1742015..1742293(-)	partial			WP_003595964.1	GNAT family N-acetyltransferase	75.0	74.0	43.7
MGA_1833	LOCUS_18280	sequence1:1827674..1828012(-)	frameshift		1827939,1827684	WP_001557561.1	isochorismatase family protein	79.5	47.6	48.3
MGA_1834	LOCUS_18290	sequence1:1828261..1828746(+)	frameshift,internal_stop_codon	1828918..1828920(+)	1828740,1828806	WP_002385351.1	MDR family MFS transporter	99.4	32.5	47.6
MGA_1835	LOCUS_18300	sequence1:1829111..1829530(+)	internal_stop_codon	1828916..1828918(+),1829084..1829086(+)		WP_011674828.1	MDR family MFS transporter	74.8	21.4	48.1
MGA_1852	LOCUS_18470	sequence1:1846444..1847241(-)	frameshift		1847339	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1882	LOCUS_18770	sequence1:1872149..1872685(-)	internal_stop_codon	1872719..1872721(-),1872872..1872874(-)		WP_102777394.1	IS3 family transposase	100.0	47.1	86.0
MGA_1883	LOCUS_18780	sequence1:1873042..1873281(-)	frameshift,internal_stop_codon	1873042..1873044(-),1872871..1872873(-)	1873011	WP_102777394.1	IS3 family transposase	100.0	21.0	94.9
MGA_1887	LOCUS_18820	sequence1:1877783..1878580(-)	frameshift		1878678	WP_120719018.1	IS3 family transposase	99.2	58.6	71.9
MGA_1891	LOCUS_18860	sequence1:1881287..1881490(+)	internal_stop_codon	1881488..1881490(+)		WP_002287225.1	IS30 family transposase	100.0	21.0	67.2
MGA_1892	LOCUS_18870	sequence1:1881560..1881985(+)	frameshift,internal_stop_codon	1881488..1881490(+)	1881961	WP_002389992.1	IS30-like element IS6770 family transposase	89.4	39.5	63.5
MGA_1893	LOCUS_18880	sequence1:1881930..1882220(+)	frameshift		1881961	WP_002325884.1	IS30 family transposase	85.4	25.9	64.6
MGA_1907	LOCUS_19020	sequence1:1897379..1898176(+)	frameshift		1897280	WP_120719018.1	IS3 family transposase	99.2	58.6	72.2
MGA_1910	LOCUS_19050	sequence1:1899689..1899850(+)	partial			WP_002983113.1	hypothetical protein	100.0	54.6	75.5
MGA_1919	LOCUS_19140	sequence1:1907924..1908673(-)	partial			WP_011014004.1	excalibur calcium-binding domain-containing protein	20.1	41.8	54.2
MGA_1928	LOCUS_19230	sequence1:1916992..1917330(+)	partial			WP_010922622.1	ROK family protein	81.2	31.0	83.5
MGA_2003	LOCUS_19980	sequence1:1996657..1996947(+)	frameshift		1996938	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_2004	LOCUS_19990	sequence1:1997127..1997762(+)	frameshift		1996938	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	57.3	96.7
MGA_2021	LOCUS_20160	sequence1:2012735..2012968(+)	frameshift		2012923	WP_000604263.1	tagatose-6-phosphate kinase	83.1	20.7	76.6
MGA_2022	LOCUS_20170	sequence1:2012892..2013689(+)	frameshift		2012926	WP_010922663.1	tagatose-6-phosphate kinase	93.2	79.6	59.9
MGA_2079	LOCUS_20740	sequence1:2076288..2076605(+)	partial			WP_002983650.1	DNA-directed RNA polymerase subunit omega	68.6	68.6	94.4
MGA_2092	LOCUS_20870	sequence1:2090520..2091494(+)	partial			WP_010922534.1	DEAD/DEAH box helicase	99.7	73.2	71.5
MGA_2093	LOCUS_20880	sequence1:2091751..2092131(+)	partial			WP_002983685.1	ComF family protein	100.0	57.0	61.1
MGA_2095	LOCUS_20900	sequence1:2092899..2093156(-)	frameshift		2092792,2093145,2092922	WP_001153836.1	IS30 family transposase	88.2	22.4	68.0
MGA_2098	LOCUS_20930	sequence1:2094414..2094809(+)	internal_stop_codon	2094807..2094809(+)		WP_011986470.1	ABC transporter ATP-binding protein	99.2	56.7	36.4
MGA_2099	LOCUS_20940	sequence1:2094831..2095109(+)	internal_stop_codon	2094807..2094809(+)		WP_000859641.1	ATP-binding cassette domain-containing protein	80.4	24.5	54.1
MGA_2101	LOCUS_20960	sequence1:2095700..2096479(-)	frameshift		2096523	WP_088197863.1	IS3-like element ISSag2 family transposase	100.0	70.4	93.8
MGA_2102	LOCUS_20970	sequence1:2096515..2096805(-)	frameshift		2096523	WP_088197863.1	IS3-like element ISSag2 family transposase	97.9	25.5	94.7
MGA_2108	LOCUS_21030	sequence1:2103129..2103410(+)	partial			WP_000766394.1	Cof-type HAD-IIB family hydrolase	88.2	29.0	42.7
MGA_2114	LOCUS_21080	sequence1:2113451..2113750(+)	frameshift,internal_stop_codon	2113228..2113230(+),2113400..2113402(+)	2113344	WP_000154537.1	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	83.8	11.0	33.7
MGA_2115	LOCUS_21090	sequence1:2114247..2114669(-)	frameshift,internal_stop_codon	2114754..2114756(-),2114760..2114762(-)	2113984,2114795,2114687	WP_001153836.1	IS30 family transposase	99.3	41.5	61.9
MGA_2118	LOCUS_21120	sequence1:2117707..2117982(+)	frameshift,internal_stop_codon	2117708..2117710(+)	2117713	WP_002897353.1	GNAT family N-acetyltransferase	74.7	24.1	47.8
MGA_2119	LOCUS_21130	sequence1:2118092..2118634(-)	frameshift		2118645	WP_010922530.1	alpha-mannosidase	99.4	19.9	79.3
MGA_2120	LOCUS_21140	sequence1:2118631..2118921(-)	frameshift		2119129,2118645	WP_010922530.1	alpha-mannosidase	96.9	10.3	89.2
MGA_2121	LOCUS_21150	sequence1:2119103..2120065(-)	frameshift		2119135	WP_010922530.1	alpha-mannosidase	60.9	21.6	85.1
MGA_2122	LOCUS_21160	sequence1:2120130..2120279(-)	frameshift,internal_stop_codon	2120304..2120306(-),2120157..2120159(-)	2120162	WP_038431480.1	glycoside hydrolase family 125 protein	83.7	9.6	92.7
MGA_2123	LOCUS_21170	sequence1:2120304..2120483(-)	frameshift,internal_stop_codon	2120304..2120306(-),2120157..2120159(-)	2120162	WP_038431480.1	glycoside hydrolase family 125 protein	100.0	13.8	94.9
MGA_2124	LOCUS_21180	sequence1:2120516..2121256(+)	frameshift,internal_stop_codon	2121251..2121253(+)	2121238	WP_002983707.1	GntR family transcriptional regulator	99.2	70.2	86.9
MGA_2125	LOCUS_21190	sequence1:2121337..2122446(+)	partial			WP_010922527.1	glycoside hydrolase family 1 protein	85.6	72.5	86.8
MGA_2126	LOCUS_21200	sequence1:2122832..2123524(+)	partial			WP_010922531.1	transcriptional regulator RocA	95.2	49.9	38.7
MGA_2127	LOCUS_21210	sequence1:2123817..2124266(-)	internal_stop_codon	2123817..2123819(-)		WP_002285980.1	GH92 family glycosyl hydrolase	62.4	13.0	52.7
MGA_2128	LOCUS_21220	sequence1:2124216..2125070(+)	partial			WP_010922520.1	response regulator transcription factor	91.2	52.4	84.6
MGA_2129	LOCUS_21230	sequence1:2125090..2127636(+)	internal_stop_codon	2127907..2127909(+),2127634..2127636(+)		WP_023610113.1	glycoside hydrolase family 2 protein	100.0	74.7	74.4
MGA_2131	LOCUS_21250	sequence1:2128006..2128500(+)	internal_stop_codon	2127907..2127909(+)		WP_023610113.1	glycoside hydrolase family 2 protein	99.4	14.1	46.6
MGA_2147	LOCUS_21400	sequence3:438..680(-)	partial			WP_002263544.1	type II toxin-antitoxin system HicB family antitoxin	95.0	60.8	53.9
