{
    "type": "genome",
    "identifier": "GCF_016725165.1",
    "organism": "Streptococcus lutetiensis",
    "title": "Streptococcus lutetiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016725165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16357327",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "150055",
        "species_taxid": "150055",
        "organism_name": "Streptococcus lutetiensis",
        "infraspecific_name": "strain=FDAARGOS_1158",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/20",
        "asm_name": "ASM1672516v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_016725165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/725/165/GCF_016725165.1_ASM1672516v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1793521",
        "genome_size_ungapped": "1793521",
        "gc_percent": "37.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-30",
        "total_gene_count": "1822",
        "protein_coding_gene_count": "1643",
        "non_coding_gene_count": "95",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-20",
    "dateModified": "2021-01-20",
    "datePublished": "2021-01-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus lutetiensis"
        ],
        "sample_taxid": [
            "150055"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "0.501 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1793521",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1793521",
        "N50 (bp)": "1793521",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "1804",
        "Average Protein Length": "284.4",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "21",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=FDAARGOS_1158",
                "accession": "GCA_016725165.1",
                "taxid": 150055,
                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 595,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=NCTC13774",
                "accession": "GCA_900475675.1",
                "taxid": 150055,
                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 594,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus lutetiensis",
                "strain": "strain=FDAARGOS_1018",
                "accession": "GCA_016403165.1",
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                "species_taxid": 150055,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1608,
                "matched_fragments": 568,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptococcus infantarius",
                "strain": "strain=NCTC13760",
                "accession": "GCA_900459445.1",
                "taxid": 102684,
                "species_taxid": 102684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.3311,
                "matched_fragments": 513,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus infantarius subsp. infantarius",
                "strain": "strain=ATCC BAA-102",
                "accession": "GCA_000154985.1",
                "taxid": 150054,
                "species_taxid": 102684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.2705,
                "matched_fragments": 499,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equinus",
                "strain": "strain=NCTC12969",
                "accession": "GCA_900459295.1",
                "taxid": 1335,
                "species_taxid": 1335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4301,
                "matched_fragments": 472,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus equinus",
                "strain": "strain=ATCC 9812",
                "accession": "GCA_000187265.1",
                "taxid": 1335,
                "species_taxid": 1335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2364,
                "matched_fragments": 458,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus oriscaviae",
                "strain": "strain=HKU75",
                "accession": "GCA_018137985.1",
                "taxid": 2781599,
                "species_taxid": 2781599,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5631,
                "matched_fragments": 64,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus protaetiae",
                "strain": "strain=KACC 19320",
                "accession": "GCA_006965445.1",
                "taxid": 2592653,
                "species_taxid": 2592653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.135,
                "matched_fragments": 50,
                "total_fragments": 597,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900475675.1",
                "gtdb_species": "s__Streptococcus lutetiensis",
                "ani": 99.9998,
                "matched_fragments": 592,
                "total_fragments": 597,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 50,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000154985.1",
                "gtdb_species": "s__Streptococcus infantarius",
                "ani": 94.3084,
                "matched_fragments": 497,
                "total_fragments": 597,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "95.30",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 24,
                "status": "-"
            },
            {
                "accession": "GCF_900101445.1",
                "gtdb_species": "s__Streptococcus equinus_B",
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                "matched_fragments": 501,
                "total_fragments": 597,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.02",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900104225.1",
                "gtdb_species": "s__Streptococcus equinus_D",
                "ani": 89.0725,
                "matched_fragments": 472,
                "total_fragments": 597,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016461705.1",
                "gtdb_species": "s__Streptococcus vicugnae",
                "ani": 88.9209,
                "matched_fragments": 498,
                "total_fragments": 597,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000187265.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 42,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.157,
        "cell_length": -0.167,
        "doubling_h": -0.216,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.89,
        "genome_size": 1914457.333,
        "gc_content": 37.7,
        "coding_genes": 1743.25,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 67.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.285,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.969,
        "thermophilic_range_tmp": 0.03,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.943,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.056,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptococcus",
        "lutetiensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}