{ "type": "genome", "identifier": "GCF_016726205.1", "organism": "Acinetobacter ursingii", "title": "Acinetobacter ursingii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016726205.1", "bioproject": "PRJNA224116", "biosample": "SAMN16357264", "wgs_master": "na", "refseq_category": "na", "taxid": "108980", "species_taxid": "108980", "organism_name": "Acinetobacter ursingii", "infraspecific_name": "strain=FDAARGOS_1095", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/20", "asm_name": "ASM1672620v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016726205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/726/205/GCF_016726205.1_ASM1672620v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3612496", "genome_size_ungapped": "3612496", "gc_percent": "40.000000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016726205.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "3412", "protein_coding_gene_count": "3199", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-20", "dateModified": "2021-01-20", "datePublished": "2021-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter ursingii" ], "sample_taxid": [ "108980" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "1.018 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3612496", "Number of Sequences": "5", "Longest Sequences (bp)": "3420387", "N50 (bp)": "3420387", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "3348", "Average Protein Length": "309.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "21", "Number of tRNAs": "73", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter ursingii", "strain": "strain=FDAARGOS_1095", "accession": "GCA_016726205.1", "taxid": 108980, "species_taxid": 108980, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 84.8249, "matched_fragments": 830, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2379, "matched_fragments": 409, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.7154, "matched_fragments": 399, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.4894, "matched_fragments": 455, "total_fragments": 1202, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368825.1", "gtdb_species": "s__Acinetobacter ursingii", "ani": 99.9717, "matched_fragments": 1151, "total_fragments": 1202, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.69", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 69, "status": "conclusive" }, { "accession": "GCF_009372255.1", "gtdb_species": 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0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "ursingii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }