{ "type": "genome", "identifier": "GCF_016728505.1", "organism": "Corynebacterium riegelii", "title": "Corynebacterium riegelii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "US Food and Drug Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016728505.1", "bioproject": "PRJNA224116", "biosample": "SAMN16357283", "wgs_master": "na", "refseq_category": "na", "taxid": "156976", "species_taxid": "156976", "organism_name": "Corynebacterium riegelii", "infraspecific_name": "strain=FDAARGOS_1114", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/20", "asm_name": "ASM1672850v1", "asm_submitter": "US Food and Drug Administration", "gbrs_paired_asm": "GCA_016728505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/728/505/GCF_016728505.1_ASM1672850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2519232", "genome_size_ungapped": "2519232", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-06", "total_gene_count": "2400", "protein_coding_gene_count": "2302", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-20", "dateModified": "2021-01-20", "datePublished": "2021-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium riegelii" ], "sample_taxid": [ "156976" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Unknown", "Unknown" ], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Braunschweig" ], "sample_host_location_id": [], "data_size": "0.709 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2519232", "Number of Sequences": "1", "Longest Sequences (bp)": "2519232", "N50 (bp)": "2519232", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "2365", "Average Protein Length": "321.7", "Coding Ratio (%)": "90.6", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium riegelii", "strain": "strain=FDAARGOS_1114", "accession": "GCA_016728505.1", "taxid": 156976, "species_taxid": 156976, "relation_to_type": "type", "validated": 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379, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium imitans", "strain": "strain=DSM 44264", "accession": "GCA_000739455.1", "taxid": 156978, "species_taxid": 156978, "relation_to_type": "type", "validated": true, "ani": 80.3269, "matched_fragments": 372, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 80.2754, "matched_fragments": 380, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014490555.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 80.068, "matched_fragments": 373, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 79.9741, "matched_fragments": 394, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium fournieri", "strain": "strain=Marseille-P2948", "accession": "GCA_900176865.1", "taxid": 1852390, "species_taxid": 1852390, "relation_to_type": "type", "validated": true, "ani": 79.9507, "matched_fragments": 373, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 79.947, "matched_fragments": 403, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lujinxingii", "strain": "strain=zg-917", "accession": "GCA_014267325.1", "taxid": 2763010, "species_taxid": 2763010, "relation_to_type": "type", "validated": true, "ani": 79.837, "matched_fragments": 377, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 79.4869, "matched_fragments": 353, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=DSM 45434", "accession": "GCA_900105305.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 79.3278, "matched_fragments": 271, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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91.9594, "matched_fragments": 673, "total_fragments": 839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013978595.1", "gtdb_species": "s__Corynebacterium haemomassiliense", "ani": 80.6442, "matched_fragments": 424, "total_fragments": 839, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001831515.1", "gtdb_species": "s__Corynebacterium sp001831515", "ani": 80.3283, 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