{
    "type": "genome",
    "identifier": "GCF_016734805.1",
    "organism": "Marivirga atlantica",
    "title": "Marivirga atlantica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Guangdong institute of microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016734805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17313513",
        "wgs_master": "JAERQG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1548457",
        "species_taxid": "1548457",
        "organism_name": "Marivirga atlantica",
        "infraspecific_name": "strain=SM1354",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/20",
        "asm_name": "ASM1673480v1",
        "asm_submitter": "Guangdong institute of microbiology",
        "gbrs_paired_asm": "GCA_016734805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/734/805/GCF_016734805.1_ASM1673480v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4192794",
        "genome_size_ungapped": "4192794",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016734805.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3636",
        "protein_coding_gene_count": "3589",
        "non_coding_gene_count": "42",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-20",
    "dateModified": "2021-01-20",
    "datePublished": "2021-01-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Marivirga atlantica"
        ],
        "sample_taxid": [
            "1548457"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "1.181 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4192794",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1635370",
        "N50 (bp)": "1084420",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.6",
        "Number of CDSs": "3548",
        "Average Protein Length": "358.2",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Marivirga atlantica",
                "strain": "strain=SM1354",
                "accession": "GCA_016734805.1",
                "taxid": 1548457,
                "species_taxid": 1548457,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1391,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Marivirga lumbricoides",
                "strain": "strain=CGMCC 1.10832",
                "accession": "GCA_014636295.1",
                "taxid": 1046115,
                "species_taxid": 1046115,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2459,
                "matched_fragments": 214,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marivirga sericea",
                "strain": "strain=DSM 4125",
                "accession": "GCA_900177665.1",
                "taxid": 1028,
                "species_taxid": 1028,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7989,
                "matched_fragments": 177,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marivirga tractuosa",
                "strain": "strain=DSM 4126",
                "accession": "GCA_000183425.1",
                "taxid": 1006,
                "species_taxid": 1006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6441,
                "matched_fragments": 185,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvivirga kasyanovii",
                "strain": "strain=JCM 16186",
                "accession": "GCA_009711405.1",
                "taxid": 396812,
                "species_taxid": 396812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0725,
                "matched_fragments": 59,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseivirga spongicola",
                "strain": "strain=UST030701-084",
                "accession": "GCA_001592965.1",
                "taxid": 333140,
                "species_taxid": 333140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4345,
                "matched_fragments": 54,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016734805.1",
                "gtdb_species": "s__Marivirga atlantica",
                "ani": 100.0,
                "matched_fragments": 1391,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014636295.1",
                "gtdb_species": "s__Marivirga lumbricoides",
                "ani": 78.2278,
                "matched_fragments": 215,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900177665.1",
                "gtdb_species": "s__Marivirga sericea",
                "ani": 77.8111,
                "matched_fragments": 177,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000183425.1",
                "gtdb_species": "s__Marivirga tractuosa",
                "ani": 77.6441,
                "matched_fragments": 185,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003973485.1",
                "gtdb_species": "s__Marivirga sp003973485",
                "ani": 77.1504,
                "matched_fragments": 158,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016679925.1",
                "gtdb_species": "s__Marivirga sp016679925",
                "ani": 77.1015,
                "matched_fragments": 158,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Marivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001592965.1",
                "gtdb_species": "s__Fabibacter spongicola",
                "ani": 76.4345,
                "matched_fragments": 54,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.73",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 1.0,
        "doubling_h": null,
        "growth_tmp": 27.75,
        "optimum_tmp": 30.0,
        "optimum_ph": null,
        "genome_size": 4628747.5,
        "gc_content": 36.905,
        "coding_genes": 3742.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 39.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Marivirga",
        "atlantica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}