{ "type": "genome", "identifier": "GCF_016743815.1", "organism": "Sphingomonas aliaeris", "title": "Sphingomonas aliaeris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bonn", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016743815.1", "bioproject": "PRJNA224116", "biosample": "SAMN15666296", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2759526", "species_taxid": "2759526", "organism_name": "Sphingomonas aliaeris", "infraspecific_name": "strain=DH-S5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/22", "asm_name": "ASM1674381v1", "asm_submitter": "University of Bonn", "gbrs_paired_asm": "GCA_016743815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/743/815/GCF_016743815.1_ASM1674381v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4262007", "genome_size_ungapped": "4262007", "gc_percent": "64.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016743815.1-RS_2024_11_18", "annotation_date": "2024-11-18", "total_gene_count": "4159", "protein_coding_gene_count": "3825", "non_coding_gene_count": "57", "pubmed_id": "34435946" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-22", "dateModified": "2021-01-22", "datePublished": "2021-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas aliaeris" ], "sample_taxid": [ "2759526" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: in the city of Bonn" ], "sample_host_location_id": [], "data_size": "1.175 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 10.0, "max": 10.0 }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4262007", "Number of Sequences": "3", "Longest Sequences (bp)": "3916662", "N50 (bp)": "3916662", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "4196", "Average Protein Length": "300.6", "Coding Ratio (%)": "88.8", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas aliaeris", "strain": "strain=DH-S5", "accession": "GCA_016743815.1", "taxid": 2759526, "species_taxid": 2759526, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1417, "total_fragments": 1419, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 81.82, "matched_fragments": 717, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas glacialis", "strain": "strain=CGMCC 1.8957", "accession": "GCA_014653575.1", "taxid": 658225, "species_taxid": 658225, "relation_to_type": "type", "validated": true, "ani": 80.1168, "matched_fragments": 611, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 80.0731, "matched_fragments": 615, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, 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"strain=3-7", "accession": "GCA_004208535.1", "taxid": 2484750, "species_taxid": 2484750, "relation_to_type": "type", "validated": true, "ani": 79.4743, "matched_fragments": 544, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panacis", "strain": "strain=DCY99", "accession": "GCA_001717955.1", "taxid": 1560345, "species_taxid": 1560345, "relation_to_type": "type", "validated": true, "ani": 79.4723, "matched_fragments": 553, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 79.2787, "matched_fragments": 513, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidimutans", "strain": "strain=KACC 14949", "accession": "GCA_002374835.1", 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"ani": 78.6415, "matched_fragments": 547, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 78.5616, "matched_fragments": 500, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 78.4852, "matched_fragments": 418, "total_fragments": 1419, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 78.3787, "matched_fragments": 494, 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