{ "type": "genome", "identifier": "GCF_016745235.1", "organism": "Chryseobacterium endalhagicum", "title": "Chryseobacterium endalhagicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016745235.1", "bioproject": "PRJNA224116", "biosample": "SAMN17103326", "wgs_master": "JAELVM000000000.1", "refseq_category": "reference genome", "taxid": "2797638", "species_taxid": "2797638", "organism_name": "Chryseobacterium endalhagicum", "infraspecific_name": "strain=L7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/22", "asm_name": "ASM1674523v1", "asm_submitter": "Third Institute of Oceanography", "gbrs_paired_asm": "GCA_016745235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/745/235/GCF_016745235.1_ASM1674523v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4931506", "genome_size_ungapped": "4931412", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016745235.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4378", "protein_coding_gene_count": "4287", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-22", "dateModified": "2021-01-22", "datePublished": "2021-01-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium endalhagicum" ], "sample_taxid": [ "2797638" ], "sample_host_organism": [ "Alhagi sparsifolia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.382 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4931506", "Number of Sequences": "10", "Longest Sequences (bp)": "2325054", "N50 (bp)": "1214495", "Gap Ratio (%)": "0.001906", "GCcontent (%)": "38.6", "Number of CDSs": "4253", "Average Protein Length": "330.7", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium endalhagicum", "strain": "strain=L7", "accession": "GCA_016745235.1", "taxid": 2797638, "species_taxid": 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1131, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium angstadtii", "strain": "strain=KM", "accession": "GCA_001045465.1", "taxid": 558151, "species_taxid": 558151, "relation_to_type": "type", "validated": true, "ani": 84.4065, "matched_fragments": 1233, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 84.2635, "matched_fragments": 1093, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium luteum", "strain": "strain=DSM 18605", "accession": "GCA_000737785.1", "taxid": 421531, "species_taxid": 421531, "relation_to_type": "type", "validated": true, "ani": 84.23, "matched_fragments": 1035, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.3613, "matched_fragments": 652, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.3374, "matched_fragments": 751, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.1742, "matched_fragments": 694, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella palustris", "strain": "strain=DSM 21579", "accession": "GCA_000422265.1", "taxid": 493376, "species_taxid": 493376, "relation_to_type": "type", "validated": true, "ani": 76.6335, "matched_fragments": 114, "total_fragments": 1639, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016745235.1", "gtdb_species": "s__Chryseobacterium sp016745235", "ani": 100.0, "matched_fragments": 1639, "total_fragments": 1639, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001563495.1", "gtdb_species": "s__Chryseobacterium kwangjuense", "ani": 86.0333, "matched_fragments": 1298, "total_fragments": 1639, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900169075.1", "gtdb_species": "s__Chryseobacterium phocaeense", "ani": 85.8699, "matched_fragments": 1286, "total_fragments": 1639, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737715.1", "gtdb_species": "s__Chryseobacterium sp000737715", "ani": 85.6353, "matched_fragments": 1264, 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