{ "type": "genome", "identifier": "GCF_016746085.1", "organism": "Zobellella iuensis", "title": "Zobellella iuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016746085.1", "bioproject": "PRJNA224116", "biosample": "SAMN17319965", "wgs_master": "JAERTZ000000000.1", "refseq_category": "reference genome", "taxid": "2803811", "species_taxid": "2803811", "organism_name": "Zobellella iuensis", "infraspecific_name": "strain=CGMCC 1.18722", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/24", "asm_name": "ASM1674608v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_016746085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/746/085/GCF_016746085.1_ASM1674608v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4223911", "genome_size_ungapped": "4223911", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016746085.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3978", "protein_coding_gene_count": "3847", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-24", "dateModified": "2021-01-24", "datePublished": "2021-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Zobellella iuensis" ], "sample_taxid": [ "2803811" ], "sample_host_organism": [], 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"matched_fragments": 742, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas marisflavi", "strain": "strain=102-Na3", "accession": "GCA_003049725.1", "taxid": 2059724, "species_taxid": 2059724, "relation_to_type": "type", "validated": true, "ani": 82.6137, "matched_fragments": 739, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 77.0025, "matched_fragments": 302, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.7942, "matched_fragments": 224, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.7842, "matched_fragments": 234, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 76.6412, "matched_fragments": 234, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.5748, "matched_fragments": 202, "total_fragments": 1392, "ani_threshold": 95, "status": "below_threshold" } 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003049725.1", "gtdb_species": "s__Oceanimonas marisflavi", "ani": 82.6105, "matched_fragments": 740, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003075035.1", "gtdb_species": "s__Zobellella_A maritima", "ani": 81.5976, "matched_fragments": 741, "total_fragments": 1392, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Zobellella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.102, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 32.5, "optimum_ph": 7.0, "genome_size": 4174221.0, "gc_content": 63.8, "coding_genes": 3695.5, "rRNA16S_genes": 8.0, "tRNA_genes": 96.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Zobellella", "iuensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }