{ "type": "genome", "identifier": "GCF_016756775.1", "organism": "Cedecea sulfonylureivorans", "title": "Cedecea sulfonylureivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese academy of agricultural sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016756775.1", "bioproject": "PRJNA224116", "biosample": "SAMN17213460", "wgs_master": "JAERMU000000000.1", "refseq_category": "reference genome", "taxid": "3051154", "species_taxid": "3051154", "organism_name": "Cedecea sulfonylureivorans", "infraspecific_name": "strain=LAM2020", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/26", "asm_name": "ASM1675677v1", "asm_submitter": "Chinese academy of agricultural sciences", "gbrs_paired_asm": "GCA_016756775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/756/775/GCF_016756775.1_ASM1675677v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5136744", "genome_size_ungapped": "5136744", "gc_percent": "54.000000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016756775.1-RS_2024_06_03", "annotation_date": "2024-06-03", "total_gene_count": "4800", "protein_coding_gene_count": "4624", "non_coding_gene_count": "96", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-26", "dateModified": "2021-01-26", "datePublished": "2021-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Cedecea sulfonylureivorans" ], "sample_taxid": [ "3051154" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.460 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5136744", "Number of Sequences": "89", "Longest Sequences (bp)": "408300", "N50 (bp)": "214711", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.0", "Number of CDSs": "4685", "Average Protein Length": "316.9", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Buttiauxella warmboldiae", "strain": "strain=CCUG 35512", "accession": "GCA_003818135.1", "taxid": 82993, "species_taxid": 82993, 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"matched_fragments": 882, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella agrestis", "strain": "strain=NCTC12119", "accession": "GCA_900446255.1", "taxid": 82977, "species_taxid": 82977, "relation_to_type": "type", "validated": true, "ani": 81.7371, "matched_fragments": 937, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella agrestis", "strain": "strain=ATCC 33320", "accession": "GCA_000735355.1", "taxid": 82977, "species_taxid": 82977, "relation_to_type": "type", "validated": true, "ani": 81.6982, "matched_fragments": 911, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella brennerae", "strain": "strain=ATCC 51605", "accession": "GCA_001654925.1", "taxid": 82988, "species_taxid": 82988, "relation_to_type": "type", "validated": true, "ani": 81.6919, "matched_fragments": 906, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella gaviniae", "strain": "strain=ATCC 51604", "accession": "GCA_001654835.1", "taxid": 82990, "species_taxid": 82990, "relation_to_type": "type", "validated": true, "ani": 81.6584, "matched_fragments": 870, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea neteri", "strain": "strain=NBRC 105707", "accession": "GCA_001571265.1", "taxid": 158822, "species_taxid": 158822, "relation_to_type": "suspected-type", "validated": true, "ani": 81.6555, "matched_fragments": 860, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cedecea lapagei", "strain": "strain=NCTC11466", "accession": "GCA_900635955.1", "taxid": 158823, "species_taxid": 158823, "relation_to_type": "type", "validated": true, "ani": 81.645, "matched_fragments": 866, "total_fragments": 1674, "ani_threshold": 95, "status": "below_threshold" }, { 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