{ "type": "genome", "identifier": "GCF_016758195.1", "organism": "Leucobacter chromiireducens subsp. solipictus", "title": "Leucobacter chromiireducens subsp. solipictus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Faculty of Chemical Engineering, University of Porto", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016758195.1", "bioproject": "PRJNA224116", "biosample": "SAMN09988952", "wgs_master": "QYAC00000000.1", "refseq_category": "reference genome", "taxid": "398235", "species_taxid": "283877", "organism_name": "Leucobacter chromiireducens subsp. solipictus", "infraspecific_name": "strain=TAN 31504", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/27", "asm_name": "ASM1675819v1", "asm_submitter": "Faculty of Chemical Engineering, University of Porto", "gbrs_paired_asm": "GCA_016758195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/758/195/GCF_016758195.1_ASM1675819v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3537946", "genome_size_ungapped": "3537800", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016758195.1-RS_2024_03_17", "annotation_date": "2024-03-17", "total_gene_count": "3153", "protein_coding_gene_count": "3076", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-27", "dateModified": "2021-01-27", "datePublished": "2021-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter chromiireducens subsp. solipictus" ], "sample_taxid": [ "398235" ], "sample_host_organism": [ "C. elegans" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Stanford, California" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3537946", "Number of Sequences": "11", "Longest Sequences (bp)": "775415", "N50 (bp)": "451461", "Gap Ratio (%)": "0.004268", "GCcontent (%)": "68.9", "Number of CDSs": "3151", "Average Protein Length": "341.2", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_016758235.1", 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668625, "relation_to_type": "type", "validated": true, "ani": 80.5086, "matched_fragments": 562, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 80.4707, "matched_fragments": 539, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 80.2579, "matched_fragments": 454, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 22788", "accession": "GCA_900102345.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 80.2107, "matched_fragments": 501, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 80.1863, "matched_fragments": 497, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 80.1523, "matched_fragments": 474, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter komagatae", "strain": "strain=DSM 8803", "accession": "GCA_006716085.1", "taxid": 55969, "species_taxid": 55969, "relation_to_type": "type", "validated": true, "ani": 79.6838, "matched_fragments": 417, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 79.6256, "matched_fragments": 375, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter japonicus", "strain": "strain=CBX130", "accession": "GCA_001273855.1", "taxid": 1461259, "species_taxid": 1461259, "relation_to_type": "type", "validated": true, "ani": 79.6065, "matched_fragments": 441, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter musarum subsp. musarum", "strain": "strain=CBX152", "accession": "GCA_001273845.1", "taxid": 1461261, "species_taxid": 1930747, "relation_to_type": "type", "validated": true, "ani": 79.5334, "matched_fragments": 418, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter viscericola", "strain": "strain=HDW9C", "accession": "GCA_011299575.1", "taxid": 2714935, "species_taxid": 2714935, "relation_to_type": "type", "validated": true, "ani": 78.7559, "matched_fragments": 340, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium allii", "strain": "strain=20TX0166", "accession": "GCA_021271025.1", "taxid": 2878384, "species_taxid": 2878384, "relation_to_type": "type", "validated": true, "ani": 77.4628, "matched_fragments": 207, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 77.3141, "matched_fragments": 223, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium yannicii", "strain": "strain=DSM 23203", "accession": "GCA_024055635.1", "taxid": 671622, "species_taxid": 671622, "relation_to_type": "type", "validated": true, "ani": 77.1531, "matched_fragments": 228, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 76.2634, "matched_fragments": 174, "total_fragments": 1172, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016758195.1", "gtdb_species": "s__Leucobacter solipictus", "ani": 100.0, "matched_fragments": 1172, "total_fragments": 1172, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", 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