{ "type": "genome", "identifier": "GCF_016765615.1", "organism": "Clostridium paridis", "title": "Clostridium paridis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016765615.1", "bioproject": "PRJNA224116", "biosample": "SAMN17370666", "wgs_master": "JAESWA000000000.1", "refseq_category": "reference genome", "taxid": "2803863", "species_taxid": "2803863", "organism_name": "Clostridium paridis", "infraspecific_name": "strain=YIM B02565", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/27", "asm_name": "ASM1676561v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_016765615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/765/615/GCF_016765615.1_ASM1676561v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4080554", "genome_size_ungapped": "4080005", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016765615.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4079", "protein_coding_gene_count": "3958", "non_coding_gene_count": "102", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-27", "dateModified": "2021-01-27", "datePublished": "2021-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium paridis" ], "sample_taxid": [ "2803863" ], "sample_host_organism": [ "Paris polyphylla var. yunnanensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4080554", "Number of Sequences": "31", "Longest Sequences (bp)": "1098554", "N50 (bp)": "452056", "Gap Ratio (%)": "0.013454", "GCcontent (%)": "30.2", "Number of CDSs": "3997", "Average Protein Length": "298.7", "Coding Ratio (%)": "87.8", "Number of rRNAs": "0", "Number of tRNAs": "81", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium intestinale", "strain": "strain=DSM 6191", "accession": "GCA_900130055.1", "taxid": 36845, "species_taxid": 36845, 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