{ "type": "genome", "identifier": "GCF_016772275.1", "organism": "Heyndrickxia vini", "title": "Heyndrickxia vini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016772275.1", "bioproject": "PRJNA224116", "biosample": "SAMN16955019", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1476025", "species_taxid": "1476025", "organism_name": "Heyndrickxia vini", "infraspecific_name": "strain=JCM 19841", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1677227v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_016772275.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/772/275/GCF_016772275.1_ASM1677227v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4309805", "genome_size_ungapped": "4309805", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016772275.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4297", "protein_coding_gene_count": "4090", "non_coding_gene_count": "132", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Heyndrickxia vini" ], "sample_taxid": [ "1476025" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.208 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4309805", "Number of Sequences": "1", "Longest Sequences (bp)": "4309805", "N50 (bp)": "4309805", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.0", "Number of CDSs": "4201", "Average Protein Length": "286.4", "Coding Ratio (%)": "83.8", "Number of rRNAs": "30", "Number of tRNAs": "98", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Heyndrickxia vini", "strain": "strain=JCM 19841", "accession": "GCA_016772275.1", "taxid": 1476025, "species_taxid": 1476025, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1436, "total_fragments": 1436, "ani_threshold": 95, 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"Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 79.756, "matched_fragments": 523, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus mesonae", "strain": "strain=FJAT-13985", "accession": "GCA_001636315.1", "taxid": 1193713, "species_taxid": 1193713, "relation_to_type": "type", "validated": true, "ani": 79.3371, "matched_fragments": 130, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia shackletonii", "strain": "strain=LMG 18435", "accession": "GCA_001420715.1", "taxid": 157838, "species_taxid": 157838, "relation_to_type": "type", "validated": true, "ani": 79.1864, "matched_fragments": 302, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 79.1564, "matched_fragments": 93, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 78.8617, "matched_fragments": 87, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 78.7865, "matched_fragments": 141, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia shackletonii", "strain": "strain=LMG 18435", "accession": "GCA_011008805.1", "taxid": 157838, "species_taxid": 157838, 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"total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, "relation_to_type": "type", "validated": true, "ani": 76.7648, "matched_fragments": 114, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ureibacillus acetophenoni", "strain": "strain=JC23", "accession": "GCA_900220965.1", "taxid": 614649, "species_taxid": 614649, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 65, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.6637, "matched_fragments": 119, "total_fragments": 1436, "ani_threshold": 95, 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