{
    "type": "genome",
    "identifier": "GCF_016775155.1",
    "organism": "Fulvivirga marina",
    "title": "Fulvivirga marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016775155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17487852",
        "wgs_master": "JAEUGD000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2494733",
        "species_taxid": "2494733",
        "organism_name": "Fulvivirga marina",
        "infraspecific_name": "strain=29W222",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/01/31",
        "asm_name": "ASM1677515v1",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_016775155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/775/155/GCF_016775155.1_ASM1677515v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6786237",
        "genome_size_ungapped": "6786139",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016775155.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "5455",
        "protein_coding_gene_count": "5378",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-01-31",
    "dateModified": "2021-01-31",
    "datePublished": "2021-01-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fulvivirga marina"
        ],
        "sample_taxid": [
            "2494733"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jimo"
        ],
        "sample_host_location_id": [],
        "data_size": "1.928 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "6786237",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "1137201",
        "N50 (bp)": "365325",
        "Gap Ratio (%)": "0.001930",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "5252",
        "Average Protein Length": "377.0",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fulvivirga marina",
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                "relation_to_type": "type",
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                "total_fragments": 2231,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fulvivirga kasyanovii",
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                "accession": "GCA_009711405.1",
                "taxid": 396812,
                "species_taxid": 396812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2019,
                "matched_fragments": 979,
                "total_fragments": 2231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvivirga imtechensis",
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                "accession": "GCA_000331535.1",
                "taxid": 881893,
                "species_taxid": 881893,
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                "validated": true,
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                "matched_fragments": 276,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvivirga lutimaris",
                "strain": "strain=KCTC 42720",
                "accession": "GCA_009711525.1",
                "taxid": 1819566,
                "species_taxid": 1819566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.948,
                "matched_fragments": 94,
                "total_fragments": 2231,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fulvivirga sediminis",
                "strain": "strain=2943",
                "accession": "GCA_016757215.1",
                "taxid": 2803949,
                "species_taxid": 2803949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7167,
                "matched_fragments": 146,
                "total_fragments": 2231,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_016775155.1",
                "gtdb_species": "s__Fulvivirga sp016775155",
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                "matched_fragments": 2231,
                "total_fragments": 2231,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fulvivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009711405.1",
                "gtdb_species": "s__Fulvivirga kasyanovii",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fulvivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000331535.1",
                "gtdb_species": "s__Fulvivirga imtechensis",
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                "matched_fragments": 275,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fulvivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009711525.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fulvivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016757215.1",
                "gtdb_species": "s__Fulvivirga sp016757215",
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                "matched_fragments": 145,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001657315.1",
                "gtdb_species": "s__Fulvivirga sp001657315",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002338655.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012926615.1",
                "gtdb_species": "s__Fabibacter_A sp012926615",
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                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Fabibacter_A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.603,
        "cell_length": 0.361,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 36.0,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fulvivirga",
        "marina"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}