{ "type": "genome", "identifier": "GCF_016785185.1", "organism": "Heyndrickxia sporothermodurans", "title": "Heyndrickxia sporothermodurans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016785185.1", "bioproject": "PRJNA224116", "biosample": "SAMN17031180", "wgs_master": "JAEKDY000000000.1", "refseq_category": "na", "taxid": "46224", "species_taxid": "46224", "organism_name": "Heyndrickxia sporothermodurans", "infraspecific_name": "strain=DSM 10599", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/01", "asm_name": "ASM1678518v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_016785185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/785/185/GCF_016785185.1_ASM1678518v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3839826", "genome_size_ungapped": "3839826", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "302", "contig_count": "302", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "4072", "protein_coding_gene_count": "3806", "non_coding_gene_count": "134", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-01", "dateModified": "2021-02-01", "datePublished": "2021-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Heyndrickxia sporothermodurans" ], "sample_taxid": [ "46224" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3839826", "Number of Sequences": "302", "Longest Sequences (bp)": "126942", "N50 (bp)": "27181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.7", "Number of CDSs": "3910", "Average Protein Length": "270.9", "Coding Ratio (%)": "82.8", "Number of rRNAs": "6", "Number of tRNAs": "96", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_016785185.1", "taxid": 46224, "species_taxid": 46224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1127, "total_fragments": 1138, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_003055085.1", "taxid": 46224, "species_taxid": 46224, "relation_to_type": "type", "validated": true, "ani": 99.7931, "matched_fragments": 955, "total_fragments": 1138, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia vini", "strain": "strain=JCM 19841", "accession": "GCA_016772275.1", "taxid": 1476025, "species_taxid": 1476025, "relation_to_type": "type", "validated": true, "ani": 89.4233, "matched_fragments": 931, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_017809215.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 79.4255, "matched_fragments": 441, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 79.35, "matched_fragments": 437, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 78.4651, "matched_fragments": 134, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus frigoritolerans", "strain": "strain=DSM 8801", "accession": "GCA_024169475.1", "taxid": 450367, "species_taxid": 450367, "relation_to_type": "type", "validated": true, "ani": 77.4357, "matched_fragments": 74, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia lenta", "strain": "strain=NCTC4824", "accession": "GCA_900478165.1", "taxid": 1467, "species_taxid": 1467, "relation_to_type": "type", "validated": true, "ani": 76.9878, "matched_fragments": 90, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.8372, "matched_fragments": 117, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus rhizophilus", "strain": "strain=FJAT-49825", "accession": "GCA_018343535.1", "taxid": 2833579, "species_taxid": 2833579, "relation_to_type": "type", "validated": true, "ani": 76.8126, "matched_fragments": 112, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia wuyishanensis", "strain": "strain=CGMCC 1.12709", "accession": "GCA_022900255.1", "taxid": 1347903, "species_taxid": 1347903, "relation_to_type": "type", "validated": true, "ani": 76.6688, "matched_fragments": 112, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 76.6615, "matched_fragments": 101, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia endophyticus", "strain": "strain=RG28", "accession": "GCA_017814275.1", "taxid": 2820819, "species_taxid": 2820819, "relation_to_type": "type", "validated": true, "ani": 76.6491, "matched_fragments": 79, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016756695.1", "gtdb_species": "s__Heyndrickxia sporothermodurans", "ani": 99.9741, "matched_fragments": 1135, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.84", "num_clustered_genomes": 38, "status": "conclusive" }, { "accession": "GCF_016772275.1", "gtdb_species": "s__Heyndrickxia vini", "ani": 89.4233, "matched_fragments": 931, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018333075.1", "gtdb_species": "s__Heyndrickxia sporothermodurans_A", "ani": 79.4781, "matched_fragments": 519, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017809215.1", "gtdb_species": "s__Heyndrickxia oleronia", "ani": 79.4283, "matched_fragments": 441, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_018343615.1", "gtdb_species": "s__Margalitia sp018343615", "ani": 78.143, "matched_fragments": 217, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420715.1", "gtdb_species": "s__Margalitia shackletonii", "ani": 78.0982, "matched_fragments": 275, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900166665.1", "gtdb_species": "s__Cytobacillus gottheilii_A", "ani": 77.9789, "matched_fragments": 105, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002844575.1", "gtdb_species": "s__Margalitia camelliae", "ani": 77.7101, "matched_fragments": 246, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002577655.1", "gtdb_species": "s__Metabacillus sp002577655", "ani": 77.5706, "matched_fragments": 109, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900199695.1", "gtdb_species": "s__Niallia sp900199695", "ani": 77.3313, "matched_fragments": 119, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Niallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010975035.1", "gtdb_species": "s__Neobacillus thermocopriae", "ani": 77.2225, "matched_fragments": 94, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.41", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003668575.1", "gtdb_species": "s__Falsibacillus albus", "ani": 77.1011, "matched_fragments": 90, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-25281;g__Falsibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000242895.2", "gtdb_species": "s__Bacillus_BU sp000242895", "ani": 76.8265, "matched_fragments": 103, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BU", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017497975.1", "gtdb_species": "s__Metabacillus sp017497975", "ani": 76.8201, "matched_fragments": 116, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002585305.1", "gtdb_species": "s__Neobacillus sp002585305", "ani": 76.7064, "matched_fragments": 116, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001591545.1", "gtdb_species": "s__Bacillus_AH lentus", "ani": 76.6392, "matched_fragments": 88, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Bacillus_AH", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015071065.1", "gtdb_species": "s__Bacillus_A cereus_BA", "ani": 76.5198, "matched_fragments": 77, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Heyndrickxia", "sporothermodurans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }