{
    "type": "genome",
    "identifier": "GCF_016785945.1",
    "organism": "Olleya sediminilitoris",
    "title": "Olleya sediminilitoris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sungkyunkwan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_016785945.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17056777",
        "wgs_master": "JAEMEF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2795739",
        "species_taxid": "2795739",
        "organism_name": "Olleya sediminilitoris",
        "infraspecific_name": "strain=YSTF-M6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/01",
        "asm_name": "ASM1678594v1",
        "asm_submitter": "Sungkyunkwan University",
        "gbrs_paired_asm": "GCA_016785945.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/785/945/GCF_016785945.1_ASM1678594v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3419716",
        "genome_size_ungapped": "3419716",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_016785945.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3151",
        "protein_coding_gene_count": "3075",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-01",
    "dateModified": "2021-02-01",
    "datePublished": "2021-02-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Olleya sediminilitoris"
        ],
        "sample_taxid": [
            "2795739"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Incheon"
        ],
        "sample_host_location_id": [],
        "data_size": "0.942 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3419716",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "529954",
        "N50 (bp)": "242063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.1",
        "Number of CDSs": "3084",
        "Average Protein Length": "330.4",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000518485.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "accession": "GCA_900114005.1",
                "taxid": 1144750,
                "species_taxid": 1144750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.159,
                "matched_fragments": 757,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_003259525.1",
                "taxid": 639310,
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                "matched_fragments": 610,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesoflavibacter zeaxanthinifaciens",
                "strain": "strain=DSM 18436",
                "accession": "GCA_000422365.1",
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                "species_taxid": 393060,
                "relation_to_type": "type",
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                "ani": 79.6258,
                "matched_fragments": 528,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris",
                "strain": "strain=KCTC 42117",
                "accession": "GCA_003008435.1",
                "taxid": 1520893,
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                "ani": 79.4943,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesoflavibacter profundi",
                "strain": "strain=YC1039",
                "accession": "GCA_014764305.1",
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                "species_taxid": 2708110,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris",
                "strain": "strain=CECT 8597",
                "accession": "GCA_014191595.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychroserpens luteolus",
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                "accession": "GCA_021032705.1",
                "taxid": 2855840,
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                "matched_fragments": 245,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Algibacter pacificus",
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                "accession": "GCA_008033385.1",
                "taxid": 2599389,
                "species_taxid": 2599389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6097,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontimicrobium aquaticum",
                "strain": "strain=CAU 1491",
                "accession": "GCA_005047595.1",
                "taxid": 2565367,
                "species_taxid": 2565367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3365,
                "matched_fragments": 256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavivirga algicola",
                "strain": "strain=Y03",
                "accession": "GCA_012910715.1",
                "taxid": 2729136,
                "species_taxid": 2729136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2763,
                "matched_fragments": 215,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyunsoonleella ulvae",
                "strain": "strain=HU1-3",
                "accession": "GCA_016827605.1",
                "taxid": 2799948,
                "species_taxid": 2799948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2457,
                "matched_fragments": 193,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavivirga eckloniae",
                "strain": "strain=ECD14",
                "accession": "GCA_002886045.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_016785945.1",
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                "matched_fragments": 1121,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Olleya",
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        ]
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    "_bac2feature": {
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}