{ "type": "genome", "identifier": "GCF_016786415.1", "organism": "Legionella bononiensis", "title": "Legionella bononiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bologna", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016786415.1", "bioproject": "PRJNA224116", "biosample": "SAMN16808032", "wgs_master": "JADWVN000000000.1", "refseq_category": "na", "taxid": "2793102", "species_taxid": "2793102", "organism_name": "Legionella bononiensis", "infraspecific_name": "strain=30cs62", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/01", "asm_name": "ASM1678641v1", "asm_submitter": "University of Bologna", "gbrs_paired_asm": "GCA_016786415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/786/415/GCF_016786415.1_ASM1678641v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4136543", "genome_size_ungapped": "4136543", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016786415.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3548", "protein_coding_gene_count": "3467", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-01", "dateModified": "2021-02-01", "datePublished": "2021-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella bononiensis" ], "sample_taxid": [ "2793102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.174 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4136543", "Number of Sequences": "32", "Longest Sequences (bp)": "664490", "N50 (bp)": "176017", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "3478", "Average Protein Length": "341.7", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella bononiensis", "strain": "strain=30cs62", "accession": "GCA_016786415.1", "taxid": 2793102, "species_taxid": 2793102, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1358, "total_fragments": 1361, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella quateirensis", "strain": "strain=ATCC 49507", "accession": "GCA_001467955.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 91.4466, "matched_fragments": 1111, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella quateirensis", "strain": "strain=NCTC12376", "accession": "GCA_900452695.1", "taxid": 45072, "species_taxid": 45072, "relation_to_type": "type", "validated": true, "ani": 91.3468, "matched_fragments": 1134, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella moravica", "strain": "strain=NCTC12239", "accession": "GCA_900452715.1", "taxid": 39962, "species_taxid": 39962, "relation_to_type": "type", "validated": true, "ani": 84.1455, "matched_fragments": 874, "total_fragments": 1361, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000373765.1", "gtdb_species": "s__Legionella shakespearei", "ani": 78.9308, "matched_fragments": 300, "total_fragments": 1361, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011764505.1", "gtdb_species": "s__Legionella sp011764505", "ani": 78.6792, "matched_fragments": 284, "total_fragments": 1361, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "bononiensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }