{ "type": "genome", "identifier": "GCF_016798325.1", "organism": "Marinobacter mangrovi", "title": "Marinobacter mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Marine Genetic Resources,Third Institute of Oceanography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016798325.1", "bioproject": "PRJNA224116", "biosample": "SAMN17378692", "wgs_master": "JAERVO000000000.1", "refseq_category": "reference genome", "taxid": "2803918", "species_taxid": "2803918", "organism_name": "Marinobacter mangrovi", "infraspecific_name": "strain=CHFG3-1-5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/02", "asm_name": "ASM1679832v1", "asm_submitter": "Key Laboratory of Marine Genetic Resources,Third Institute of Oceanography", "gbrs_paired_asm": "GCA_016798325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/798/325/GCF_016798325.1_ASM1679832v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4649115", "genome_size_ungapped": "4649115", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016798325.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4280", "protein_coding_gene_count": "4209", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-02", "dateModified": "2021-02-02", "datePublished": "2021-02-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter mangrovi" ], "sample_taxid": [ "2803918" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Fujian" ], "sample_host_location_id": [], "data_size": "1.306 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4649115", "Number of Sequences": "16", "Longest Sequences (bp)": "1354091", "N50 (bp)": "715535", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "4242", "Average Protein Length": "324.3", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter mangrovi", "strain": "strain=CHFG3-1-5", "accession": "GCA_016798325.1", "taxid": 2803918, "species_taxid": 2803918, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1540, "total_fragments": 1542, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 88.0601, "matched_fragments": 1243, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bohaiensis", "strain": "strain=T17", "accession": "GCA_003258515.1", "taxid": 2201898, "species_taxid": 2201898, "relation_to_type": "type", "validated": true, "ani": 82.1706, "matched_fragments": 1041, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nanhaiticus", "strain": "strain=D15-8W", "accession": "GCA_000364845.1", "taxid": 1305740, "species_taxid": 1305740, "relation_to_type": "type", "validated": true, "ani": 80.037, "matched_fragments": 800, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fonticola", "strain": "strain=CS412", "accession": "GCA_008122265.1", "taxid": 2603215, "species_taxid": 2603215, "relation_to_type": "type", "validated": true, "ani": 79.6791, "matched_fragments": 660, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 78.9344, "matched_fragments": 462, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.783, "matched_fragments": 500, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.6741, "matched_fragments": 384, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.5413, "matched_fragments": 375, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 78.0834, "matched_fragments": 372, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhejiangensis", "strain": "strain=CGMCC 1.7061", "accession": "GCA_900114775.1", "taxid": 488535, "species_taxid": 488535, "relation_to_type": "type", "validated": true, "ani": 78.0592, "matched_fragments": 358, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 77.7093, "matched_fragments": 288, "total_fragments": 1542, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003789045.1", "gtdb_species": "s__Marinobacter_A sp003789045", "ani": 97.6714, "matched_fragments": 1374, "total_fragments": 1542, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.70", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_004327985.1", "gtdb_species": "s__Marinobacter_A halodurans", "ani": 88.0538, "matched_fragments": 1244, "total_fragments": 1542, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003258515.1", "gtdb_species": "s__Marinobacter_A bohaiensis", "ani": 82.1612, "matched_fragments": 1043, "total_fragments": 1542, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000364845.1", "gtdb_species": "s__Marinobacter_A nanhaiticus", "ani": 80.0477, "matched_fragments": 798, "total_fragments": 1542, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008122265.1", "gtdb_species": "s__Marinobacter_A fonticola", "ani": 79.6834, "matched_fragments": 659, "total_fragments": 1542, "gtdb_taxonomy": 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