{ "tc_result": [ { "organism_name": "Sphingomonas taxi", "strain": "strain=ATCC 55669", "accession": "GCA_000764535.1", "taxid": 1549858, "species_taxid": 1549858, "relation_to_type": "type", "validated": true, "ani": 82.7265, "matched_fragments": 768, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aquatilis", "strain": "strain=NBRC 16722", "accession": "GCA_007990915.1", "taxid": 93063, "species_taxid": 93063, "relation_to_type": "type", "validated": true, "ani": 82.3139, "matched_fragments": 698, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas melonis", "strain": "strain=DAPP-PG 224", "accession": "GCA_000379045.1", "taxid": 152682, "species_taxid": 152682, "relation_to_type": "type", "validated": true, "ani": 82.3011, "matched_fragments": 759, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas 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"GCA_014197105.1", "taxid": 535907, "species_taxid": 535907, "relation_to_type": "type", "validated": true, "ani": 81.0896, "matched_fragments": 680, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 81.0688, "matched_fragments": 619, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas endophytica", "strain": "strain=DSM 101535", "accession": "GCA_014199415.1", "taxid": 869719, "species_taxid": 869719, "relation_to_type": "type", "validated": true, "ani": 80.7299, "matched_fragments": 576, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas abaci", "strain": "strain=DSM 15867", "accession": "GCA_014199625.1", "taxid": 237611, "species_taxid": 237611, "relation_to_type": "type", "validated": true, "ani": 80.7236, "matched_fragments": 644, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas rubra", "strain": "strain=CGMCC 1.9113", "accession": "GCA_900115745.1", "taxid": 634430, "species_taxid": 634430, "relation_to_type": "type", "validated": true, "ani": 80.5697, "matched_fragments": 607, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidivorax", "strain": "strain=KHI67", "accession": "GCA_007995065.1", "taxid": 862135, "species_taxid": 862135, "relation_to_type": "type", "validated": true, "ani": 80.4992, "matched_fragments": 618, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidimutans", "strain": "strain=KACC 14949", "accession": "GCA_002374835.1", "taxid": 862134, "species_taxid": 862134, "relation_to_type": "type", "validated": true, "ani": 80.4256, "matched_fragments": 617, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pseudosanguinis", "strain": "strain=DSM 19512", "accession": "GCA_014196255.1", "taxid": 413712, "species_taxid": 413712, "relation_to_type": "type", "validated": true, "ani": 80.3735, "matched_fragments": 637, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 80.3117, "matched_fragments": 656, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas pseudosanguinis", "strain": "strain=DSM 19512", "accession": "GCA_017052355.1", "taxid": 413712, "species_taxid": 413712, "relation_to_type": "type", "validated": true, "ani": 80.2983, "matched_fragments": 646, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 80.2963, "matched_fragments": 652, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 80.2207, "matched_fragments": 640, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas phyllosphaerae", "strain": "strain=FA2", "accession": "GCA_000427645.1", "taxid": 257003, "species_taxid": 257003, "relation_to_type": "type", "validated": true, "ani": 80.1971, "matched_fragments": 583, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 79.8772, "matched_fragments": 554, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 79.3813, "matched_fragments": 502, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas lenta", "strain": "strain=1PNM-20", "accession": "GCA_002288825.1", "taxid": 1141887, "species_taxid": 1141887, "relation_to_type": "type", "validated": true, "ani": 79.2348, "matched_fragments": 520, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 78.938, "matched_fragments": 449, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016820445.1", "gtdb_species": "s__Sphingomonas sp016820445", "ani": 100.0, "matched_fragments": 1192, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.21", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003355005.1", "gtdb_species": "s__Sphingomonas sp003355005", 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"matched_fragments": 721, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013409985.1", "gtdb_species": "s__Sphingomonas melonis_A", "ani": 82.7426, "matched_fragments": 765, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764535.1", "gtdb_species": "s__Sphingomonas taxi", "ani": 82.7036, "matched_fragments": 771, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000632225.1", "gtdb_species": "s__Sphingomonas sp000632225", "ani": 82.5957, "matched_fragments": 778, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196115.1", "gtdb_species": "s__Sphingomonas aquatilis", "ani": 82.2564, "matched_fragments": 760, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.36", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_010450875.1", "gtdb_species": "s__Sphingomonas insulae", "ani": 81.932, "matched_fragments": 701, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014197105.1", "gtdb_species": "s__Sphingomonas jinjuensis", "ani": 81.0699, "matched_fragments": 683, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014641735.1", "gtdb_species": "s__Sphingomonas metalli", "ani": 81.0685, "matched_fragments": 619, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007995065.1", "gtdb_species": "s__Sphingomonas ginsenosidivorax", "ani": 80.4765, "matched_fragments": 620, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014196255.1", "gtdb_species": "s__Sphingomonas pseudosanguinis", "ani": 80.3619, "matched_fragments": 638, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }