{ "type": "genome", "identifier": "GCF_016820615.1", "organism": "Planococcus beijingensis", "title": "Planococcus beijingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Technology and Business University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016820615.1", "bioproject": "PRJNA224116", "biosample": "SAMN16580387", "wgs_master": "JADHDZ000000000.1", "refseq_category": "reference genome", "taxid": "2782551", "species_taxid": "2782551", "organism_name": "Planococcus beijingensis", "infraspecific_name": "strain=REN14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/07", "asm_name": "ASM1682061v1", "asm_submitter": "Beijing Technology and Business University", "gbrs_paired_asm": "GCA_016820615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/820/615/GCF_016820615.1_ASM1682061v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3713775", "genome_size_ungapped": "3713775", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016820615.1-RS_2024_06_10", "annotation_date": "2024-06-10", "total_gene_count": "3686", "protein_coding_gene_count": "3603", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-07", "dateModified": "2021-02-07", "datePublished": "2021-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus beijingensis" ], "sample_taxid": [ "2782551" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Szechuan" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3713775", "Number of Sequences": "21", "Longest Sequences (bp)": "1291737", "N50 (bp)": "465862", "Gap Ratio (%)": "0.000188", "GCcontent (%)": "45.1", "Number of CDSs": "3668", "Average Protein Length": "293.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus wigleyi", "strain": "strain=Sa1BUA13", "accession": "GCA_014836985.1", "taxid": 2762216, "species_taxid": 2762216, "relation_to_type": "type", "validated": true, "ani": 97.1644, "matched_fragments": 1113, "total_fragments": 1229, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus soli", "strain": "strain=c23", "accession": "GCA_016881065.1", "taxid": 2666072, "species_taxid": 2666072, "relation_to_type": "type", "validated": true, "ani": 82.6788, "matched_fragments": 880, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_001687565.2", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 81.6908, "matched_fragments": 786, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_000264415.1", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 81.6259, "matched_fragments": 777, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus faecalis", "strain": "strain=AJ003", "accession": "GCA_002009235.1", "taxid": 1598147, "species_taxid": 1598147, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9452, "matched_fragments": 609, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus donghaensis", "strain": "strain=DSM 22276", "accession": "GCA_001687665.2", "taxid": 414778, "species_taxid": 414778, "relation_to_type": "type", "validated": true, "ani": 80.9088, "matched_fragments": 559, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus halocryophilus", "strain": "strain=Or1", "accession": "GCA_000342445.1", "taxid": 1215089, "species_taxid": 1215089, "relation_to_type": "type", "validated": true, "ani": 80.7054, "matched_fragments": 596, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus halocryophilus", "strain": "strain=DSM 24743", "accession": "GCA_001687585.2", "taxid": 1215089, "species_taxid": 1215089, "relation_to_type": "type", "validated": true, "ani": 80.6854, "matched_fragments": 605, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus koreensis", "strain": "strain=10704", "accession": "GCA_004761975.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 79.4493, "matched_fragments": 401, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus koreensis", "strain": "strain=DSM 15895", "accession": "GCA_014202615.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 79.4181, "matched_fragments": 415, "total_fragments": 1229, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014836985.1", "gtdb_species": "s__Planococcus sp014836985", "ani": 97.1644, "matched_fragments": 1113, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_018613575.1", "gtdb_species": "s__Planococcus sp018613575", "ani": 83.0944, "matched_fragments": 842, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": 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"GCF_001687565.2", "gtdb_species": "s__Planococcus antarcticus", "ani": 81.6643, "matched_fragments": 789, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.42", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001687585.2", "gtdb_species": "s__Planococcus halocryophilus", "ani": 80.6749, "matched_fragments": 606, "total_fragments": 1229, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, 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