{ "type": "genome", "identifier": "GCF_016862055.1", "organism": "Actinoplanes capillaceus", "title": "Actinoplanes capillaceus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862055.1", "bioproject": "PRJNA224116", "biosample": "SAMD00229059", "wgs_master": "BOMF00000000.1", "refseq_category": "reference genome", "taxid": "76756", "species_taxid": "76756", "organism_name": "Actinoplanes capillaceus", "infraspecific_name": "strain=NBRC 16408", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686205v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/055/GCF_016862055.1_ASM1686205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9722078", "genome_size_ungapped": "9722078", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "220", "contig_count": "220", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862055.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "8980", "protein_coding_gene_count": "8773", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes capillaceus" ], "sample_taxid": [ "76756" ], "sample_host_organism": [], 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"below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1843, "matched_fragments": 1172, "total_fragments": 3138, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014647795.1", "gtdb_species": "s__Actinoplanes campanulatus", "ani": 96.7624, "matched_fragments": 2723, "total_fragments": 3138, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0428, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "96.79", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_014205215.1", 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