{ "type": "genome", "identifier": "GCF_016862095.1", "organism": "Actinoplanes cyaneus", "title": "Actinoplanes cyaneus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_016862095.1", "bioproject": "PRJNA224116", "biosample": "SAMD00229061", "wgs_master": "BOMH00000000.1", "refseq_category": "reference genome", "taxid": "52696", "species_taxid": "52696", "organism_name": "Actinoplanes cyaneus", "infraspecific_name": "strain=NBRC 14990", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/01/29", "asm_name": "ASM1686209v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_016862095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/016/862/095/GCF_016862095.1_ASM1686209v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10358347", "genome_size_ungapped": "10358347", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "184", "contig_count": "184", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_016862095.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "9284", "protein_coding_gene_count": "9061", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-01-29", "dateModified": "2021-01-29", "datePublished": "2021-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes cyaneus" ], "sample_taxid": [ "52696" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 78.8157, "matched_fragments": 853, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 78.7012, "matched_fragments": 978, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 78.6656, "matched_fragments": 1180, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.3379, "matched_fragments": 1123, "total_fragments": 3366, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016862095.1", "gtdb_species": "s__Actinoplanes cyaneus", "ani": 100.0, "matched_fragments": 3358, "total_fragments": 3366, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_000715855.1", "gtdb_species": "s__Actinoplanes liguriensis", 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